RNA id: TU72332


Basic Information

Item Value
RNA id TU72332
length 1120
lncRNA type inter_gene
GC content 0.44
exon number 4
gene id G57858
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 42173258 ~ 42175707 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGTGGCAcaggattacatttttatttaaaatatacagtggtAGGATATCTCACATATATGTTACAATTGTATAGTTTACAGATATTCAAAGGTTGTTCATTCTGCAATAACAGATAATGTAGATCAGTATGTGATGCATATAGAACTGTGCAGATACCAGAGTTTTGAAGGAGATCAATATGAAAGTTACATTAGAGTAACAACAAGTGTTTTGGGATTAAATTTACACAATGTTGTAAACTCTTCAAATGGTGGATTATTAGTCAGTTCTGAATGTGAACATGAGCCGATTCATTTTGATCAGAATGGTCAGATCAGGTCCAGTGTAATGTTCATATTTACCAGACAATCTGACCATCAGTCTAGAGCTTCAATGTGCAAACTGTCGTTGAGCAGTGCTGTGTGAATACATTGAACAGTGTCAGACAGCTCTGCTCAGTGAATGATGTCAGCAGGTCCGTTCAGTACCAGGAAGgggtttgttcttgtttgttcgGGATTTATTCCACTCCCTTCATAAACTCCAGGAATTCGTCATAGTCGATCTTGCCGTCGTTGTTCTTGTCCCCGTCCCTCATCAGCTCCTCGATGTCATCCTCTGTGATGGCCTCCCCAGTGGACTCCAGCATCAGCTTCAGCTCATCTAGGTCAATGTAGCCGTCTCCATTCTTGTCAAACATCCTGAAGAGCTCTGCCAGTTCCTCCTCTGACTTTCCTTTGTTCTCCTCTTTCATGCACCGCACCATCATGACCAGGAACTCATCGAAGTCCACTGTCCCGCTACCGTCCTCATCTACCTCGTCAATCATCTCCTGCAGCTCCTCAGGGGTGGGGTTCTGGCCTAGCATTCGCATGACCTTGCCCAGCTCCTTGGTGCTGATACAGCCATCCTCCGCGTCCTGAATGAAGATGTCGAAGGCAGCCCTGAACTCTACAGTGAGAGGGAACTGAGACACTTGAAGGGCCCGGACAGAAGAGAGAAGCCCTTTGAACCAATCTTAGTGCAAAGTGGAATGAGGATCTTGTCATAAGTTGACTATAAAGGCACAAAGGTGGGTCAATATTGTGCAAAGCAAATAGTTGTGGTAGTTTTGAGCATAGGCAACTAATAAGtctaaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72308 lncRNA downstream 117130 42041199 ~ 42056128 (-) False AMCG00009582
TU72239 lncRNA downstream 357451 41814601 ~ 41815807 (-) False AMCG00009571
TU72031 lncRNA downstream 1240048 40932965 ~ 40933210 (-) True G57600
TU72026 lncRNA downstream 1396174 40721431 ~ 40777084 (-) True G57596
TU71955 lncRNA downstream 1829779 40339347 ~ 40343479 (-) True G57545
TU72348 lncRNA upstream 29563 42205270 ~ 42205559 (-) True G57873
TU72494 lncRNA upstream 292478 42468185 ~ 42468759 (-) True G57982
TU72500 lncRNA upstream 302014 42477721 ~ 42478112 (-) True G57988
TU72510 lncRNA upstream 363732 42539439 ~ 42540113 (-) True G57998
TU72547 lncRNA upstream 473143 42648850 ~ 42673707 (-) False G58025
AMCG00009584 mRNA downstream 10655 42143592 ~ 42162603 (-) True AMCG00009584
AMCG00009585 mRNA downstream 71023 42085281 ~ 42102235 (-) True AMCG00009585
AMCG00009583 mRNA downstream 90489 42073910 ~ 42082769 (-) True AMCG00009583
AMCG00009582 mRNA downstream 118217 42043496 ~ 42055041 (-) True AMCG00009582
AMCG00009576 mRNA downstream 278015 41883426 ~ 41895243 (-) True AMCG00009576
AMCG00009590 mRNA upstream 51188 42226895 ~ 42229779 (-) True AMCG00009590
AMCG00009589 mRNA upstream 67681 42243388 ~ 42254102 (-) True AMCG00009589
AMCG00009592 mRNA upstream 151162 42326869 ~ 42334548 (-) True AMCG00009592
AMCG00009599 mRNA upstream 249221 42424928 ~ 42429586 (-) True AMCG00009599
AMCG00009598 mRNA upstream 253896 42429603 ~ 42429987 (-) True AMCG00009598
TU71924 other downstream 2015787 40148725 ~ 40157471 (-) False AMCG00009521
TU71520 other downstream 3335694 38835316 ~ 38837564 (-) False AMCG00009472
TU71449 other downstream 3590438 38580285 ~ 38582820 (-) True G57155
TU70990 other downstream 4953182 37215960 ~ 37220076 (-) True G56800
TU70712 other downstream 6300661 35872123 ~ 35872597 (-) True G56568
TU72548 other upstream 493420 42669127 ~ 42673707 (-) True G58025
TU72928 other upstream 1306714 43482421 ~ 43945297 (-) True G58333
TU73015 other upstream 1813804 43989511 ~ 43995654 (-) True AMCG00009672
TU73231 other upstream 2332546 44508253 ~ 44512249 (-) False AMCG00009697
TU73235 other upstream 2366187 44541894 ~ 44542809 (-) True G58584

Expression Profile