RNA id: TU72446


Basic Information

Item Value
RNA id TU72446
length 2520
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G57945
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 42415590 ~ 42418109 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTGTGGCCGagcgtgttttgtttttttatttttaaatatattcctttttttaaggaaattaaatagGGAAAAGCTATTGCCCCCCCTGAGAAAACACGACCGAGCATAACCACAACCCGAAACAAACTGAGCCATTCCCCCTGGCCTCTGCTGCCACCATCCCTCTCCCGGCCAAACAACACCAAGCCACGTTTGGGAGCTAAAGGACAAGAATCGCAGGGCCATTCTGAGACAGGTTTAAGGATTGCAGATTTTAATTGAGAGCAGGATTAAACAACCGTGCAGTTATCCTTCCCTTTCTAATTCTTAACCCTTTCACATTCGGCAATTCGAGTAGTAGGGAGACAAATCTTATTTTCACTGGCTGCGATATAtccattattaatttactgaGGAAACCATAGTCGATTTGTAGTTGGTAAGTGGCAAAGACATAAGGAATAATAagacaatgtttgttttgtagctAATATCggtcaaaaaaactaaacaaaacacaaacaaatgcaggTGACAGGATACACGGTTGGACGCAGTGAAACTAAACGTCTCTGTAGGGGTCACCTCCAGGGAACACTTTCAGTGCTACCTTAGACAGCACTAAAATTTTGGCTGCTTTGAGACAGACCCCACCTTGTCTTCATTCTGAAaaatttaataaagtaaatcCCTTTATGATTAGCAACCATTTCATACCCTTCAAACCAGTGATGCGGCGTATCAACTGCTGTATCAAAGAATAGTTTACTGCCTCTATCTGACGGCTGCTGAGGGTTGTGTggtttttaagtattattttaatggaagaGGCTGGGAGGGGAAGGAAGGGATGGGTTGGGCTGACAGATGGACGTGGCTGACGGTGTTGATTTTTAGGTTGGTGTCTCAAATAgaatcaaatttaattaaatgaaacaaaacaaatcttaaagAGGGAGTGATGAACTAATGTAACAGTCATAAAAAGTACCAGATGATCACATTCAGTTCAGagcccaaaataataatagtactttGGTACCCTTGACCGAATATAGTTGCCATTTGGAATGCCAACCCTGGAggtttcccacaatgcaccaaAGGGCAAGAGGGGGATCAGAGAGGGGGCACTCACTGAAATCTGCACAGGCTTATGAGAGGCATGGTGAGTGGAAGCCTGGGTAATCTTCCCGATTTCCCACAGGACAAAGCGCACAGCTTTGACACAGAGACAGGATGTTAGTGGCAAAACTCCAAGCTCACAAAATAGCCGGCACCAACCCCCATACTGGGTTTCTACTGAAGCCTGCAGTGAAAAAGTGATGATGTATTTATAGCCACTTTGTCATTCTTTTGCCCTGGGTCAGACACCAGCACTAGTAGAGGTAGTCCACTGGAGTCAGTGCCACAGATATGGAAGGGAAAggatcttaaaataaatacaaaattcagaTGAGGGCAAAATGGGAAGTGGGATTATTGATTTGAGAACAAACCCAAAAACACGTCTAAAGGATGAACCAACATTGCACAAATGTCCAAGTAAGGAAGGGCAAGGCAGAGATCCAACTGGAAACTTCCCCCTCCAGCCAAGATAGTAAACTTTTGCGCAGAGAGAGCGGTCATTCTGGCTTACGTGTAGGGAAAATCAAGGGCTGGGTCTTATTTCTCATACACGTCAGTAAAATTGTTCTGGAGTTGCGATGAAGCTCACTGACCCGTATTCAGCCAAGGGTGGGAACAGAGGCTCACAGCAGCCCACAAGTGTAGGTAGGGTGTTACAATGTGTTTGGGGGGggtttccttttcattttgttttaacgtTGATCTACTTCCTTGCTGCCCATGTatgttgcaaaaaaataatctaataatacagataataaataatattaataataacaataaaacaagattcAGGTTTCTACTAAAACTGCAAAAGAACCAAGAATCAAATTCAGCTGGAACAtcattatatcattataatGGCCTTACACAGTTAAACGTGGGTGAAGGGGAGCCAGACACAGACCGACTTTTTTTTCAGGGGTTTTTAGTATTTCCTTCGTCAGAACGGGACCACAGGACGGAAACGAACAGACAAGCGGAAAATACAAAAGCACTGTGGATTTACAGACTAGCAGGGGactgatttacattttctttctcgtatttttatttttggtttgttttgccTGGGGTGGgttttaaaagaagaagaattaaaaGATGTTGCCTCTCAGTCTTTGGGACCTACGTTGCAAACACACCAAGGGatctacaaaatacatttttaaaaaaaggaaaaaaaaaaatgaaaattgccAAAACCACAAAATGAGCATAAGACTTTGCACGGAAAAAAAGTAGGAACGAAACCgttccacacaaacaaaacttgTGTCTTTCAGGAAGTAAGAAGGGAGCTCTCTTGTTTCTGGAGGATTTCTTCAAGACActtcgtttttttcttttgttttccttattattttcCCGCTTggggaaggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72439 lncRNA upstream 13138 42402235 ~ 42402452 (+) True G57940
TU72317 lncRNA upstream 327445 42085279 ~ 42088145 (+) True G57843
TU72251 lncRNA upstream 576124 41839165 ~ 41839466 (+) True G57792
TU72233 lncRNA upstream 597795 41815921 ~ 41817795 (+) True G57775
TU72228 lncRNA upstream 665446 41749555 ~ 41750144 (+) True G57770
TU72447 lncRNA downstream 32 42418141 ~ 42418505 (+) True G57946
TU72448 lncRNA downstream 481 42418590 ~ 42420823 (+) True G57947
TU72449 lncRNA downstream 9733 42427842 ~ 42428048 (+) True G57948
TU72466 lncRNA downstream 14768 42432877 ~ 42435124 (+) True G57964
TU72470 lncRNA downstream 14811 42432920 ~ 42435152 (+) False G57964
AMCG00009600 mRNA upstream 45 42414205 ~ 42415545 (+) True AMCG00009600
AMCG00009594 mRNA upstream 16259 42385499 ~ 42399331 (+) True AMCG00009594
AMCG00009591 mRNA upstream 117500 42290154 ~ 42298090 (+) True AMCG00009591
AMCG00009593 mRNA upstream 135161 42275999 ~ 42280429 (+) True AMCG00009593
AMCG00009586 mRNA upstream 144393 42266822 ~ 42271197 (+) True AMCG00009586
AMCG00009595 mRNA downstream 28848 42446957 ~ 42463730 (+) True AMCG00009595
AMCG00009604 mRNA downstream 70328 42488437 ~ 42489969 (+) True AMCG00009604
AMCG00009606 mRNA downstream 113608 42531717 ~ 42546719 (+) True AMCG00009606
AMCG00009605 mRNA downstream 148511 42566620 ~ 42570939 (+) True AMCG00009605
AMCG00009608 mRNA downstream 177984 42596093 ~ 42599734 (+) True AMCG00009608
TU72303 other upstream 337349 42036018 ~ 42078241 (+) True G57830
TU72035 other upstream 1420931 40990802 ~ 40994659 (+) True G57604
TU71881 other upstream 2310642 40102383 ~ 40104948 (+) False AMCG00009516
TU71802 other upstream 2466390 39948006 ~ 39949200 (+) True G57430
TU71670 other upstream 2978595 39434900 ~ 39436995 (+) True AMCG00009480
TU72919 other downstream 1514843 43932952 ~ 43935762 (+) True G58324
TU73161 other downstream 1968388 44386497 ~ 44387964 (+) False G58522
TU73232 other downstream 2149256 44567365 ~ 44570531 (+) True AMCG00009694
TU73244 other downstream 2166453 44584562 ~ 44599328 (+) False AMCG00009700
TU73251 other downstream 2214641 44632750 ~ 44651967 (+) True G58600

Expression Profile