RNA id: TU72494


Basic Information

Item Value
RNA id TU72494
length 575
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G57982
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 42468185 ~ 42468759 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

actgtcttatgttcttatatactATTGGTAACTGTGCCTGCTCTGACAGCACGGCTCACAACACTGAGGTCACAATCGCACAGTACTTGCCTACTTCACTGTGCCTTACTTAATCTAGTGCATGCTATTTGAGCGCACTTGTTGTAATATCTGCCCTCACCTGTTCAATGAGAGAGTTGAATCGCTCTCGTTTCTGCTCCAGAGACTCCAGCTGGTCCATGAACTGCATGGTGAGCTCGTCCAGCCGGAGCGATAACTCGGTCACGGAGACCCCCATCCCGGGACCCGCAGAGTACACCTCAACACGTAGGGATCTTCCCGCCGCGTACTGTGAACTTAAGCAGTTAATGAGCATGTACAATACGCAGCTTTTTAATAGAACCCGTCTGGCTGGTAAAGACTGCTAACACACATTCGTTTCCGCGACCTCTGGGTTGTCATATGACTGTCTCCAGCTGAGCATCGACCTCAGCCAATCCCATACACGCATACTTACTTCAAGTCTGCAACCAATCCGCGTCAACAACATAAGACCGAATGACAACCAATCATCGTGCACGCCGCGGAGAACGCCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72348 lncRNA downstream 262626 42205270 ~ 42205559 (-) True G57873
TU72332 lncRNA downstream 292478 42173258 ~ 42175707 (-) True G57858
TU72308 lncRNA downstream 412057 42041199 ~ 42056128 (-) False AMCG00009582
TU72239 lncRNA downstream 652378 41814601 ~ 41815807 (-) False AMCG00009571
TU72031 lncRNA downstream 1534975 40932965 ~ 40933210 (-) True G57600
TU72500 lncRNA upstream 8962 42477721 ~ 42478112 (-) True G57988
TU72510 lncRNA upstream 70680 42539439 ~ 42540113 (-) True G57998
TU72547 lncRNA upstream 180091 42648850 ~ 42673707 (-) False G58025
TU72563 lncRNA upstream 228138 42696897 ~ 42697133 (-) True G58039
TU72703 lncRNA upstream 537842 43006601 ~ 43010113 (-) True G58149
AMCG00009597 mRNA downstream 24117 42435235 ~ 42444068 (-) True AMCG00009597
AMCG00009598 mRNA downstream 38198 42429603 ~ 42429987 (-) True AMCG00009598
AMCG00009599 mRNA downstream 38599 42424928 ~ 42429586 (-) True AMCG00009599
AMCG00009592 mRNA downstream 133637 42326869 ~ 42334548 (-) True AMCG00009592
AMCG00009589 mRNA downstream 214083 42243388 ~ 42254102 (-) True AMCG00009589
AMCG00009596 mRNA upstream 6127 42474886 ~ 42475964 (-) True AMCG00009596
AMCG00009601 mRNA upstream 42077 42510836 ~ 42517883 (-) True AMCG00009601
AMCG00009603 mRNA upstream 68469 42537228 ~ 42537555 (-) True AMCG00009603
AMCG00009602 mRNA upstream 76869 42545628 ~ 42547223 (-) True AMCG00009602
AMCG00009612 mRNA upstream 131339 42600098 ~ 42607648 (-) True AMCG00009612
TU71924 other downstream 2310714 40148725 ~ 40157471 (-) False AMCG00009521
TU71520 other downstream 3630621 38835316 ~ 38837564 (-) False AMCG00009472
TU71449 other downstream 3885365 38580285 ~ 38582820 (-) True G57155
TU70990 other downstream 5248109 37215960 ~ 37220076 (-) True G56800
TU70712 other downstream 6595588 35872123 ~ 35872597 (-) True G56568
TU72548 other upstream 200368 42669127 ~ 42673707 (-) True G58025
TU72928 other upstream 1013662 43482421 ~ 43945297 (-) True G58333
TU73015 other upstream 1520752 43989511 ~ 43995654 (-) True AMCG00009672
TU73231 other upstream 2039494 44508253 ~ 44512249 (-) False AMCG00009697
TU73235 other upstream 2073135 44541894 ~ 44542809 (-) True G58584

Expression Profile