RNA id: TU72500


Basic Information

Item Value
RNA id TU72500
length 359
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G57988
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 42477721 ~ 42478112 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tgcacagtggtaacaaggcatgatggatccatgttctcattctgtttaTGCCAAATTCTGACTCTACCATCTGAATGTCTCAACAGAAATCGagactcatcagaccaggcaacatatttccagtcttcaactgtccaattttggtgagcttgtgcaaattgtagcctctttttcctatttgtagtggagatgagtggtaccctcaaggttgtacgtgttgtggcttcacaaatgctttgctgcatacctcggttgtaacgagtggttatttcagtcaaagttgctcttctatcagcttgaatcagtcggcccattctccgctgacctctagcatcaacaaggcattttcgcccacagga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72494 lncRNA downstream 8962 42468185 ~ 42468759 (-) True G57982
TU72348 lncRNA downstream 272162 42205270 ~ 42205559 (-) True G57873
TU72332 lncRNA downstream 302014 42173258 ~ 42175707 (-) True G57858
TU72308 lncRNA downstream 421593 42041199 ~ 42056128 (-) False AMCG00009582
TU72239 lncRNA downstream 661914 41814601 ~ 41815807 (-) False AMCG00009571
TU72510 lncRNA upstream 61327 42539439 ~ 42540113 (-) True G57998
TU72547 lncRNA upstream 170738 42648850 ~ 42673707 (-) False G58025
TU72563 lncRNA upstream 218785 42696897 ~ 42697133 (-) True G58039
TU72703 lncRNA upstream 528489 43006601 ~ 43010113 (-) True G58149
TU72704 lncRNA upstream 528489 43006601 ~ 43010065 (-) False G58149
AMCG00009596 mRNA downstream 1757 42474886 ~ 42475964 (-) True AMCG00009596
AMCG00009597 mRNA downstream 33653 42435235 ~ 42444068 (-) True AMCG00009597
AMCG00009598 mRNA downstream 47734 42429603 ~ 42429987 (-) True AMCG00009598
AMCG00009599 mRNA downstream 48135 42424928 ~ 42429586 (-) True AMCG00009599
AMCG00009592 mRNA downstream 143173 42326869 ~ 42334548 (-) True AMCG00009592
AMCG00009601 mRNA upstream 32724 42510836 ~ 42517883 (-) True AMCG00009601
AMCG00009603 mRNA upstream 59116 42537228 ~ 42537555 (-) True AMCG00009603
AMCG00009602 mRNA upstream 67516 42545628 ~ 42547223 (-) True AMCG00009602
AMCG00009612 mRNA upstream 121986 42600098 ~ 42607648 (-) True AMCG00009612
AMCG00009616 mRNA upstream 212596 42690708 ~ 42703202 (-) True AMCG00009616
TU71924 other downstream 2320250 40148725 ~ 40157471 (-) False AMCG00009521
TU71520 other downstream 3640157 38835316 ~ 38837564 (-) False AMCG00009472
TU71449 other downstream 3894901 38580285 ~ 38582820 (-) True G57155
TU70990 other downstream 5257645 37215960 ~ 37220076 (-) True G56800
TU70712 other downstream 6605124 35872123 ~ 35872597 (-) True G56568
TU72548 other upstream 191015 42669127 ~ 42673707 (-) True G58025
TU72928 other upstream 1004309 43482421 ~ 43945297 (-) True G58333
TU73015 other upstream 1511399 43989511 ~ 43995654 (-) True AMCG00009672
TU73231 other upstream 2030141 44508253 ~ 44512249 (-) False AMCG00009697
TU73235 other upstream 2063782 44541894 ~ 44542809 (-) True G58584

Expression Profile