RNA id: TU72548


Basic Information

Item Value
RNA id TU72548
length 4560
RNA type TUCP
GC content 0.47
exon number 2
gene id G58025
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 42648850 ~ 42673707 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGTGCCACTGATGGGCAACACTGCTCTGGAGGACCAGGGTGGGAGATCCCTGCGCCGAGCCAACCCCACTGTCATGGGAAACTTATTTATTGTGGCAAATGGTCACTGACATCTGAACATGCAGTTAATGGATGAAGTTGATCACTTGTGTACCACATCTTCACCTTCCCACCACACAGAAAGGCAAGTGGATACAAATGTGTCTGGGGCCGTTTCAGCTGAGGAATGTAAGGCCACACGTAGgacaagaaaattaaacacagcCTCAGCAGCAAAGTCAGTATtccacagttttattttaggaaTAATATCCTGAATCCTCTCCTTTATtttacaagacaaaaaaaaaaaaatctaagattTCTGGCtctgtttataattttttgttctacgtttttttttttccttaaaccatcacacaaaaatagaaacaagaAATTTGTACATtattccaaaaaacaaatgtaactgtACACAGTAGGATATCCTCTTATATTGCATTCAGCTTAAGACCCCTGTTACCTGTcccatacaataaaaaaaagatctgtAATTCACCAAAAGATATGTAACACTTTCTATTCCAATACAACGATTGCATTTGCTGCACAGAAATTCACAGAACTCTCAGTAGCCCCTGTAATAAATAGTGTGACCGGTCGCCCATGCAGTCCGTCTGCCCAGACAAGGTTGGCATCGGTTAGATGCGAAATTCAGTATTTCCTGCCGTAGACCGCAAGTGAACCAATCATTCAATGTACAGTCAAAATCTTAAaccagacacaaacaaaaatcacactgtgtacaaaaaacaaacaaacacaggaatACAGGGCATTCAACAAGTGGGAGCACGTGGAAGTTGCGTTGAGAAATGTTACGTCTGAATCGTGGTCGAATCTCACGATCGCTGCCGTGGTCGTGAGCAGCTTTGTTGCCTGCGGTCACGATATATAGAATCGACGCAGCGATAATGGTCATTAACGGACATGAGGACATCCAAATATATACTGCGTCATGCTCCATTTGAACGCAAAGGCAAGGAAAACACCTTTGTACTTAACAAATACAAGCCATTCATTGGAATTGACGTGACCCACAGCCTATGAATTGGCTCCTTCAAAGCACACGTTCAAGGTCAATGGCAACTGTTTTTCATCTCCGTACATCTGTATTCAGACACACCAGTAGCAACAGCATGTGCCAACCAGGTTTGGTCCCTAACTGTAGACAATGCTCCAGTTCTCACACATAATAAGCAGTATGTGGTCTAGTTATTTGGAATGTCTGTGTATCCCtctggattatatatataaaaaagtcaCCTATgtcttgtaatttaatttgtttgaaatgcaagATTCTTCTGTGGCTATGTTCTTTAAACACGCCGTGCGCTACTGCTTGCCAATGGACCTCCTACTGCACTGTTATCTGCACCATTAtccaacattttaaaacctgctGCGAATTATTGCGTAGGTCATTTCAGGTCACTGCTCCGATATCAACAGCtactctgtgtgtctgtatatatatgagaaaTGCTTCAGGTTTGGCTGGTTTTGTGACCCAACACAGTAAGAAAGGTCGTGTCCATCCTGCTCCCTGGGTGACTCCTGCTGACGGGCAGATCGctaaaggggggggggaagataCTGAAATTCACTCCTCCGCCTACCCCCTGAAGAGGCCAACTGCATGGGTGTTTTATCACAGAACCCCACCCTCGCCCCCATCCCCTGCAGCACCTCCACGTTCTGATTTTACAAAGCTCCCGTAAGTCGCGAAACACGCACCTCCCGACCCAACCGGCCTGGAAAAGGGAAATCCGTCCGGTCTCTCGTCCCGAGACGCCTCCTCCGGGCTCCCACTGCCGAGTGTGACTCAAGTTTCCTGTCGcgaatgtcttttttttttttttttttttaattaagacaactataaacaaaacaaaaaatgtgtattaaggTTTATACTGTGTGGGGCCTTCTCTCTTCTTCGGTCATTTGTctccattacaaaaaaaaatgaacaatggTCCCCTTTGTTATATGCAGTGTAATGATAtcatattcaaaatgaaaaagataaaagaaaggTAAAATGACTTCTCCTTCCCTACTTCGCCTCTACTACCAGAAAACCTCCTAGTCCCTACTACCAACCCCACCTCActcttactactactactctaTCTACTACCCTACATTACTGGATTTGGAAAACACAGATCGGGGTAATCCAGcccctttttattattattttttaaatgaatttaaatctatttattcgtttttgattaaatatttctaGATTTCTATAATACATACtgctttctgaaacaaaagctGTCAGTTTTGCACCTGCTCTAAAACCTTAAACCACCATCATGGCTTTCGCTGTCCATAACTACGGATCCATCgtgttaattaaacaaaaacaaaaaaacatctacacaAAATGACAAAGATCTACAGATCTACCTAGAATGGCTTACATTTGCAACCAATCCCAGCTGCCCCCCGCTCATCCACTAACATCGCTAAAGCCCGACTGCAAAGGCCGTTCTCATTACGGGCCCAATACTGCGTCCATTACcctatgtatacatttcaagtGTAGGAAACTTCTTGGCCTTCTCCTTCTCTGCCCCCTAACTAAACGGAGAATCTACCCGCCGTTCAGCTCCAGCCTCCTTGTACCTGGACCAGGAATCAAGAGCAACGAGGCCGGACACCTTTCCTCTCAGGTCCCCTCAGGTCTCATTTGCCTGGGGAAGCGAACTTCGCCCAGAAACTCGAGGGAGCTGGTCAGACCTCGTTGGCGAGACTCTTTGGGGGTGGGACGGGGATGGTTAGGACTCCATCTCTCAGGCTGGGATTGACGGTACCTCACACATGAAAGACTCGACAGCACTTGCACTTTGCCAGATGAAAAGAGATGGGACTGCCTCCCACTCCCACCGTTGGagaaaTGCCACCATTCCCTTCCTCTTACAGTTGGGGTTATTTAAAGCAGTATTAAACTATGGGAACGCTATAGATGAGCACCGTTCACGGCATGGAGAGATTGCACACTTTCTTGGTTTTCGAGTACAGTATCACGACCAATCAGCAGAATGGCAGCAGAGGACTGACCGAGCCAGAGGTGCGCTCGCTGCACGCCGACACAATTGCACAGTGACGCTGAGACTTTAGTGTAACTTTCCCACAATGTCTTACATTTTCAGGCCTGTGAGCAAAGATGTAAGATGAACAACTGAAGAAACAGAACGAAAAACATAAACAGAAAACCTCTGTGGTGCCATAGATGTGCTTTCGGGAGAGGGGGATCGGAGAAATGCCCAACCCGGGACAGCAAAACGAGGCGCAAGACCCACTGGGATACCTTGCAAACGAACGCTGAAAATGGTCCCGAGAGCGATGCATCTTCTAAAACGCATTCTTCTCTTTGAGAGCTCCGTTTGCACGTTTTGGTCACTGAAACGCATTTTGCTGTCCTGGGTCTCTCCCCCACCCGAAATAAATTCcataaataattttttttcttttttttcaataaaaaacaataccatGGAAAATAGAAATCTATAGCAGCGTACTTTTCATGAAGATCCCACAATGTTGAATGGAGATCCCTTCAGGCCGTTCAGAACTCTTCTGCGTCTCACTCTACAGCGGCCGGCGTGATGATCTGGTCCTGGAGTCTTTTTGATCCGcttaaaacataaacacagtGCTAACAGTTTACTCTGGACTAACATCAGCTGCGGAGGACTGACAGATCTATACACAAGGACGCAACGGAGCTCCGTCGACCCGCGGACTCGAAACACCAAACCGCCACCACGTTCACCACACCGTCCCGAAACAGCATCGTTCTCGAAGCGCCCCACTCCGTTGTGGCCAGGTTTGGCGGCCTGTTTGTGAAGAGTTGTGGATTGAAGGAATCTGATTAAATTTAGGTTTTCCCCCCTCCCTCACTGAAACTGAGGGAAGCAGACATGCAGGTGTCGGACTGTGACGTGATGCGCGTTTGGCGCTCAGTCCTGGGGCTACAGGTCGTACAGCGGATGCAAAATTCCTCAAATCACTAGATGAAGCGGGGGAAGGGGGTAATGGAGCCAAATAAGTGATTGATGCACTCAATGGAGTAAATGAGAGGGTGATCTGAAGACCGCGTGGCTCCTTTTCTTCTTGACACAGTGGGCGGCCGCTCGGGCATGAGGGGCCCAATAGCAACATTCTGAGGGTCTGGTCTCTCTGATCACAGTGCTCGTTTTAACTGGGTGGGGGGTCTTCTCGAGACGTTACCCCATCTCCCCAGGCTGTCTAAGGAGACGGGACAGGCCGGCCGTGGCAGTGGACCCCCGGGTGGGCTGGCGGGGTCGTcggggggagtggggggtgtTGTTCACAGTGGCAGCAGCCGGGTGGTGTGCAGGAACAGGGGGTTGAAGTCCTCCGAGTGCACAGCCCGGTGGAGCGAGGGCTCCGAGGCGCTGCGCTCGATCTTAGGCAGCAGGTCTTGAACTTGCTCGATGGACACCAGGATCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72510 lncRNA downstream 129014 42539439 ~ 42540113 (-) True G57998
TU72500 lncRNA downstream 191015 42477721 ~ 42478112 (-) True G57988
TU72494 lncRNA downstream 200368 42468185 ~ 42468759 (-) True G57982
TU72348 lncRNA downstream 463568 42205270 ~ 42205559 (-) True G57873
TU72332 lncRNA downstream 493420 42173258 ~ 42175707 (-) True G57858
TU72563 lncRNA upstream 23190 42696897 ~ 42697133 (-) True G58039
TU72703 lncRNA upstream 332894 43006601 ~ 43010113 (-) True G58149
TU72704 lncRNA upstream 332894 43006601 ~ 43010065 (-) False G58149
TU72810 lncRNA upstream 713476 43387183 ~ 43387918 (-) True G58246
TU72857 lncRNA upstream 802126 43475833 ~ 43476088 (-) True G58277
AMCG00009612 mRNA downstream 61479 42600098 ~ 42607648 (-) True AMCG00009612
AMCG00009602 mRNA downstream 121904 42545628 ~ 42547223 (-) True AMCG00009602
AMCG00009603 mRNA downstream 131572 42537228 ~ 42537555 (-) True AMCG00009603
AMCG00009601 mRNA downstream 151244 42510836 ~ 42517883 (-) True AMCG00009601
AMCG00009596 mRNA downstream 193163 42474886 ~ 42475964 (-) True AMCG00009596
AMCG00009616 mRNA upstream 17001 42690708 ~ 42703202 (-) True AMCG00009616
AMCG00009615 mRNA upstream 48920 42722627 ~ 42739824 (-) True AMCG00009615
AMCG00009622 mRNA upstream 117588 42791295 ~ 42797463 (-) True AMCG00009622
AMCG00009621 mRNA upstream 125338 42799045 ~ 42811220 (-) True AMCG00009621
AMCG00009624 mRNA upstream 139337 42813044 ~ 42836293 (-) True AMCG00009624
TU71924 other downstream 2511656 40148725 ~ 40157471 (-) False AMCG00009521
TU71520 other downstream 3831563 38835316 ~ 38837564 (-) False AMCG00009472
TU71449 other downstream 4086307 38580285 ~ 38582820 (-) True G57155
TU70990 other downstream 5449051 37215960 ~ 37220076 (-) True G56800
TU70712 other downstream 6796530 35872123 ~ 35872597 (-) True G56568
TU72928 other upstream 808714 43482421 ~ 43945297 (-) True G58333
TU73015 other upstream 1315804 43989511 ~ 43995654 (-) True AMCG00009672
TU73231 other upstream 1834546 44508253 ~ 44512249 (-) False AMCG00009697
TU73235 other upstream 1868187 44541894 ~ 44542809 (-) True G58584
TU73240 other upstream 1892362 44566069 ~ 44566834 (-) True G58589

Expression Profile