RNA id: TU72563


Basic Information

Item Value
RNA id TU72563
length 237
lncRNA type intronic
GC content 0.43
exon number 1
gene id G58039
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 42696897 ~ 42697133 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

agaaggtgaaatgcccaaaatcctaccgatttgtctttggggaatgttgttctcaaagtgttggattattcgctgacACATCTGCTGGCAGATTGGCGACCCttgacccatccttgctcttgaaggactaggccttttttggaggctccttatatactatgattacacgattgcttcgcctgtttcacatcaccttcttatttcaacttgtcacatcggtattagtcctaaattgcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72547 lncRNA downstream 23190 42648850 ~ 42673707 (-) False G58025
TU72510 lncRNA downstream 156784 42539439 ~ 42540113 (-) True G57998
TU72500 lncRNA downstream 218785 42477721 ~ 42478112 (-) True G57988
TU72494 lncRNA downstream 228138 42468185 ~ 42468759 (-) True G57982
TU72348 lncRNA downstream 491338 42205270 ~ 42205559 (-) True G57873
TU72703 lncRNA upstream 309468 43006601 ~ 43010113 (-) True G58149
TU72704 lncRNA upstream 309468 43006601 ~ 43010065 (-) False G58149
TU72810 lncRNA upstream 690050 43387183 ~ 43387918 (-) True G58246
TU72857 lncRNA upstream 778700 43475833 ~ 43476088 (-) True G58277
TU72932 lncRNA upstream 834302 43531435 ~ 43547585 (-) True G58336
AMCG00009612 mRNA downstream 89249 42600098 ~ 42607648 (-) True AMCG00009612
AMCG00009602 mRNA downstream 149674 42545628 ~ 42547223 (-) True AMCG00009602
AMCG00009603 mRNA downstream 159342 42537228 ~ 42537555 (-) True AMCG00009603
AMCG00009601 mRNA downstream 179014 42510836 ~ 42517883 (-) True AMCG00009601
AMCG00009596 mRNA downstream 220933 42474886 ~ 42475964 (-) True AMCG00009596
AMCG00009615 mRNA upstream 25494 42722627 ~ 42739824 (-) True AMCG00009615
AMCG00009622 mRNA upstream 94162 42791295 ~ 42797463 (-) True AMCG00009622
AMCG00009621 mRNA upstream 101912 42799045 ~ 42811220 (-) True AMCG00009621
AMCG00009624 mRNA upstream 115911 42813044 ~ 42836293 (-) True AMCG00009624
AMCG00009623 mRNA upstream 160670 42857803 ~ 42863632 (-) True AMCG00009623
TU72548 other downstream 23190 42669127 ~ 42673707 (-) True G58025
TU71924 other downstream 2539426 40148725 ~ 40157471 (-) False AMCG00009521
TU71520 other downstream 3859333 38835316 ~ 38837564 (-) False AMCG00009472
TU71449 other downstream 4114077 38580285 ~ 38582820 (-) True G57155
TU70990 other downstream 5476821 37215960 ~ 37220076 (-) True G56800
TU72928 other upstream 785288 43482421 ~ 43945297 (-) True G58333
TU73015 other upstream 1292378 43989511 ~ 43995654 (-) True AMCG00009672
TU73231 other upstream 1811120 44508253 ~ 44512249 (-) False AMCG00009697
TU73235 other upstream 1844761 44541894 ~ 44542809 (-) True G58584
TU73240 other upstream 1868936 44566069 ~ 44566834 (-) True G58589

Expression Profile