RNA id: TU72700


Basic Information

Item Value
RNA id TU72700
length 3402
lncRNA type inter_gene
GC content 0.52
exon number 1
gene id G58148
representative False

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 43006601 ~ 43010050 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGGGGTGGAGGTGGGGCGGGAGGCAGGAACGTTGTCCATCCTAATCTGCTActgaatgtatttactgtaaaaacagaaacaagtcTCCATATCTGTAACTCAACCTAACTGGACGGCTTGCTGTGTGGGTTCGGACGCGGTCGGCCCCGGCGCCTCGGACTGGGCATGCTCACCTGCGCCGTAGGGGCCCGGGGCAGAGGGGCAGTTCCTCTCGCGGCCTGTAGGGGGGTGTGTGGAGAGGGCGCGTCTCAAAAACGTTCTTGAAGGGCATGTTTTTGATTCGACATATCATTGtggagttttgttttaaatcagatGTTTTATACATATGTGTACTTGACCTGTGTCTGCACTCCAGGCGTCCACTGCGGGGTTCAGGTTGGCGGCTGGCGGTGAACAGGCTTTAAATGATCATGTTTAAACCccgggtggggggggcggtCTGCATGCAGGACAGTGGTGTCCAGACTCGGTCCCCGAGAGCCACAGTCTAACAGGTCACACCAAATCATCCGCCTCTAAAGACTGGGCATTTCAACCCGTCTATTAGCGGAGGAGTTTCATTCTGTCCCTTAGTGGGCATTTGAAATCAGCACTgtagcccccccaccccccagccccaGAGGGACAGAGCCAGACTTTCTAAATTGACCAAAACCGACATCGGTTCCTAATAATGATGAGAGGATGGTTACGGCTGAAGCTATAATCGTAACAGGATCCTGTCGGTGCTCCTCTTGCCAAAGCTCAGGCATTCGCACTCCGCCCCCCCCACCTCGTTCCCTCTCTAATTGAACCGGCTCGGTGCGGCAGGATACGGTAATCCCTCGCTCTTGCACTCTTGTCAGCCTCCACCGGCAGAGTGCTTTGGCATCCATCGtggcatgaaaacaaaacactaaattgGTGGTGGCGAGGATGATGATTGATTGCTGATGACTGAGGCTCTCGGAGATCCTCAGAGGAACAGAGTGCTCGGATGCCGGCCCCCTGCGCTGAAGTCAGGAGGCACTGGACAGGGTGGgagggaggaaaacaaatgtttgagCGGATATGATTTGATCTGCACCCAGAATCCCACTTTGCAAACTCAGGTGTAGAAAGTGATGATATTTCTGATTTGCTGGTTTGGATGACTGCTGGCTTCAGTTAGGGAGACCAGCAGCCCACGTACTTACTGTATATTAGTGTATATGTGCCCCCCAGGCACAGAAAAGGAAATCTGCTGGTGACTGCATGTGTCGGCCCATTTAGAAGGAAATAAGACGTCCGGTGTTTTAAACAGGCCAGTCTATGGGGGATTCTCTGTGATTCTGTGCTTTGAAGTACATGGTCCACgctatttcagatttttttatcatttgtatgtctgtgcctttttttttatgtcattcCCATTACGATCAGGAGAAATTGCACTGAACGTTGTCCAAAGCCAGAGGCGTGTTTCGTTGTAGTCGACCAAGGGGCCACAACACCCCTGTAATTAATAAATCGCTCCTTTCCCACCTcctcaaaaatacaaaaatgcccCGTACGAGCGAACCCCGGTCTTCAGCAAGGTTTACCGTGGATCTCAGAATCCCAACCGCGAGCTTGCGCTGACCCTTCCTGTCGCTGTCCCTCGTCTCCCTGGTGCTCCCAGAGGACTCTCCTCTGCACCCCTCCTGTCCGCTCAGACTCGGATCCAGGCTGCAGGATCGAACCAGCAAGCGAAAAGCATAGCGACGCGGTCTCGCTTCTTATAACCGCCGAGCCGGATCCACTCCGACCTGAACTGCGCTGTCACTGTTACTGTACGGCCAAGTCGCGCAACAAAACGGCATGGCGAAAACCTCCGGCCGTGTACCGGGAGAGGAGcttgtgtaaaatgtgtagCTCGTCTCGTCACACGCTCTCTCGTCGTGATGTCTCGGTACCAGTAGTGTAACATCCTATGAATTCATTAGGGGCGAGGCGTTGTAATGAATAAACACGCGACGGTTTATTCTCCCTCCCGAACGCGCTCTAACCGCCGACAGACGCTTGTaaatttgtgtgtatgtattttttctgaacGCTAACATTCCAGCTGTGCCCGATACAAACCGCTTCTGAAGGGAGGCTCCTTAACAGATCTGTTGTCCTTGCTCCCACGCCTTCCCAAACCCGCTCCCTGCCCTGCTAACCACGCTGCCTGCGTCGTGTCGCGTCGGAGCGGGTTACCGGCCCGCCCTACCAAAGGAAACGCAGCTTCTCTGACCATTCCAGGGGGACAAAGACCGAAATGATTATACGGTGTCTGAAGAGAGGAACTCTTgtgtactgaattaaaaaaacaagtatgaTCTGTAAGTCCTTGTCTGCGTCTCATGTTTGCTgtgctgtctctctgtgttgttcTGTTGTGCTTCCTGTCGGCTCTCGACCCGGGCTGCAATgacctgctggtttctgttccaactgagctctcggtttcttaattgaaatgttaattgaaaTGATTAATCTGCGGAGTGGAACTCTGGAACGCTGGAAGAATTCCTGGgtgaatataattttatacttgATATCTCAGACTGGTTGAGATCGTTATGAAGCAAAGCAAAGTACTCGTTCGTTGAGTGGTTCAGTTAAGTCATGGGGAGCTTGGGTAGCACAGCAGAACAGTGGGGCTCCGGGAGCAACGTTGAGAAGGAAATTCCTACAGCTTCTTGTCTGGTGGTTCCAAGGGCCCGAGGGTGTGTGGTTTTCATGTGCCCTTGGGACGTCATGGCTCCGCGGATGGGAGTGAGCCGTCTTCACTGCAGGTGATTATTCGGCACATTTGACCACTGTGCCCAGACAGCTGCTAATGGAGGCTGGTCTAATTGATGCTGTAGTAATCCTGCCAGGGTGAGCGCAATGCACTTTAATTCAAAAGTAAACGGGAACAGCGACGGCCCCAGATCCACAAATAAAGTACCGAGCCTTTCTCCTAGACAGACGGGCTTGTTCTCCACTCGGCAGTGTGGAGGAAAGTCGGTTTTCCACAATGGCGATCCTGTTTCCTTCTCTCGTGATGGACGCCGGCTGCCCAGTACCGTTTCCCCGGGTTAAAACGGCGCTGCGTGATGTCACGGTGTGGCGTGTGTTCGGAGGCCGCAGGAGAGATCAGCACCCGAGTGTGTGAACCCGGGGGAATGAGGAATCGGCGAGGGAAGCTTTATAATGCGGGGCGGACGGTGGGGTTAGTTTCCCTGGCCCGCCTCACGTCTCTTTCAGGGCAGAATATTGTCCAAATGTCCCTGGTTAGCATGGAGGaggtgtggatgtgtgtgtccTTGGTAAAGCAGCTTTTGATTAAACCCTGGACGGCAAGAGAGTGGAAATCAGACGTGAACAGGTAAATATGTGGGTGGGGGTATTATTTCTCATGGCAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72671 lncRNA upstream 67727 42938007 ~ 42938874 (+) True G58123
TU72524 lncRNA upstream 370148 42629539 ~ 42636453 (+) True G58008
TU72499 lncRNA upstream 528489 42477715 ~ 42478112 (+) True G57987
TU72493 lncRNA upstream 537999 42468308 ~ 42468602 (+) True G57981
TU72470 lncRNA upstream 571449 42432920 ~ 42435152 (+) False G57964
TU72734 lncRNA downstream 202708 43212710 ~ 43213028 (+) True G58178
TU72753 lncRNA downstream 239401 43249403 ~ 43249641 (+) True G58195
TU72776 lncRNA downstream 299858 43309860 ~ 43311062 (+) True G58215
TU72773 lncRNA downstream 308914 43318916 ~ 43324579 (+) True G58214
TU72836 lncRNA downstream 429397 43439399 ~ 43444317 (+) False AMCG00009647
AMCG00009631 mRNA upstream 3279 42977129 ~ 43003322 (+) True AMCG00009631
AMCG00009626 mRNA upstream 34223 42960967 ~ 42972378 (+) True AMCG00009626
AMCG00009628 mRNA upstream 79544 42914780 ~ 42927057 (+) True AMCG00009628
AMCG00009627 mRNA upstream 93109 42891698 ~ 42913492 (+) True AMCG00009627
AMCG00009625 mRNA upstream 118110 42887108 ~ 42888491 (+) True AMCG00009625
AMCG00009632 mRNA downstream 41271 43051273 ~ 43052391 (+) True AMCG00009632
AMCG00009633 mRNA downstream 95477 43105479 ~ 43112950 (+) True AMCG00009633
AMCG00009636 mRNA downstream 179603 43189605 ~ 43213919 (+) True AMCG00009636
AMCG00009639 mRNA downstream 242200 43252202 ~ 43253062 (+) True AMCG00009639
AMCG00009634 mRNA downstream 248518 43258520 ~ 43266899 (+) True AMCG00009634
TU72303 other upstream 928360 42036018 ~ 42078241 (+) True G57830
TU72035 other upstream 2011942 40990802 ~ 40994659 (+) True G57604
TU71881 other upstream 2901653 40102383 ~ 40104948 (+) False AMCG00009516
TU71802 other upstream 3057401 39948006 ~ 39949200 (+) True G57430
TU71670 other upstream 3569606 39434900 ~ 39436995 (+) True AMCG00009480
TU72919 other downstream 922950 43932952 ~ 43935762 (+) True G58324
TU73161 other downstream 1376495 44386497 ~ 44387964 (+) False G58522
TU73232 other downstream 1557363 44567365 ~ 44570531 (+) True AMCG00009694
TU73244 other downstream 1574560 44584562 ~ 44599328 (+) False AMCG00009700
TU73251 other downstream 1622748 44632750 ~ 44651967 (+) True G58600

Expression Profile