RNA id: TU72703


Basic Information

Item Value
RNA id TU72703
length 3513
lncRNA type inter_gene
GC content 0.51
exon number 1
gene id G58149
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 43006601 ~ 43010113 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTTTTTCATGCAAAAAGCTTTAATTCACAACAGTATTTAAGACTCTGTAAATGCACAGTATGTACAGTATCGTAGTGCTACAAAagccaaattaattttaaaaaggactGCTTGCCATGAGAAATAATACCCCCACCCACATATTTACCTGTTCACGTCTGATTTCCACTCTCTTGCCGTCCAGGGTTTAATCAAAAGCTGCTTTACCAAggacacacacatccacacctCCTCCATGCTAACCAGGGACATTTGGACAATATTCTGCCCTGAAAGAGACGTGAGGCGGGCCAGGGAAACTAACCCCACCGTCCGCCCCGCATTATAAAGCTTCCCTCGCCGATTCCTCATTCCCCCGGGTTCACACACTCGGGTGCTGATCTCTCCTGCGGCCTCCGAACACACGCCACACCGTGACATCACGCAGCGCCGTTTTAACCCGGGGAAACGGTACTGGGCAGCCGGCGTCCATCACGAGAGAAGGAAACAGGATCGCCATTGTGGAAAACCGACTTTCCTCCACACTGCCGAGTGGAGAACAAGCCCGTCTGTCTAGGAGAAAGGCTCGGTACTTTATTTGTGGATCTGGGGCCGTCGCTGTTCCCGTTTACTTTTGAATTAAAGTGCATTGCGCTCACCCTGGCAGGATTACTACAGCATCAATTAGACCAGCCTCCATTAGCAGCTGTCTGGGCACAGTGGTCAAATGTGCCGAATAATCACCTGCAGTGAAGACGGCTCACTCCCATCCGCGGAGCCATGACGTCCCAAGGGCACATGAAAACCACACACCCTCGGGCCCTTGGAACCACCAGACAAGAAGCTGTAGGAATTTCCTTCTCAACGTTGCTCCCGGAGCCCCACTGTTCTGCTGTGCTACCCAAGCTCCCCATGACTTAACTGAACCACTCAACGAACGAGTACTTTGCTTTGCTTCATAACGATCTCAACCAGTCTGAGATATcaagtataaaattatattcacCCAGGAATTCTTCCAGCGTTCCAGAGTTCCACTCCGCAGATTAATCAtttcaattaacatttcaattaagaaaccgagagctcagttggaacagaaaccagcaggtcATTGCAGCCCGGGTCGAGAGCCGACAGGAAGCACAACAgaacaacacagagagacagcacAGCAAACATGAGACGCAGACAAGGACTTACAGAtcatacttgtttttttaattcagtacacAAGAGTTCCTCTCTTCAGACACCGTATAATCATTTCGGTCTTTGTCCCCCTGGAATGGTCAGAGAAGCTGCGTTTCCTTTGGTAGGGCGGGCCGGTAACCCGCTCCGACGCGACACGACGCAGGCAGCGTGGTTAGCAGGGCAGGGAGCGGGTTTGGGAAGGCGTGGGAGCAAGGACAACAGATCTGTTAAGGAGCCTCCCTTCAGAAGCGGTTTGTATCGGGCACAGCTGGAATGTTAGCgttcagaaaaaatacatacacacaaatttACAAGCGTCTGTCGGCGGTTAGAGCGCGTTCGGGAGGGAGAATAAACCGTCGCGTGTTTATTCATTACAACGCCTCGCCCCTAATGAATTCATAGGATGTTACACTACTGGTACCGAGACATCACGACGAGAGAGCGTGTGACGAGACGAGctacacattttacacaagCTCCTCTCCCGGTACACGGCCGGAGGTTTTCGCCATGCCGTTTTGTTGCGCGACTTGGCCGTACAGTAACAGTGACAGCGCAGTTCAGGTCGGAGTGGATCCGGCTCGGCGGTTATAAGAAGCGAGACCGCGTCGCTATGCTTTTCGCTTGCTGGTTCGATCCTGCAGCCTGGATCCGAGTCTGAGCGGACAGGAGGGGTGCAGAGGAGAGTCCTCTGGGAGCACCAGGGAGACGAGGGACAGCGACAGGAAGGGTCAGCGCAAGCTCGCGGTTGGGATTCTGAGATCCACGGTAAACCTTGCTGAAGACCGGGGTTCGCTCGTACGgggcatttttgtatttttgaggAGGTGGGAAAGGAGCGATTTATTAATTACAGGGGTGTTGTGGCCCCTTGGTCGACTACAACGAAACACGCCTCTGGCTTTGGACAACGTTCAGTGCAATTTCTCCTGATCGTAATGGgaatgacataaaaaaaaaggcacagacatacaaatgataaaaaaatctgaaatagcGTGGACCATGTACTTCAAAGCACAGAATCACAGAGAATCCCCCATAGACTGGCCTGTTTAAAACACCGGACGTCTTATTTCCTTCTAAATGGGCCGACACATGCAGTCACCAGCAGATTTCCTTTTCTGTGCCTGGGGGGCACATATACACTAATATACAGTAAGTACGTGGGCTGCTGGTCTCCCTAACTGAAGCCAGCAGTCATCCAAACCAGCAAATCAGAAATATCATCACTTTCTACACCTGAGTTTGCAAAGTGGGATTCTGGGTGCAGATCAAATCATATCCGctcaaacatttgttttcctccctcCCACCCTGTCCAGTGCCTCCTGACTTCAGCGCAGGGGGCCGGCATCCGAGCACTCTGTTCCTCTGAGGATCTCCGAGAGCCTCAGTCATCAGCAATCAATCATCATCCTCGCCACCACcaatttagtgttttgttttcatgccaCGATGGATGCCAAAGCACTCTGCCGGTGGAGGCTGACAAGAGTGCAAGAGCGAGGGATTACCGTATCCTGCCGCACCGAGCCGGTTCAATTAGAGAGGGAACGAGGTGGGGGGGGCGGAGTGCGAATGCCTGAGCTTTGGCAAGAGGAGCACCGACAGGATCCTGTTACGATTATAGCTTCAGCCGTAACCATCCTCTCATCATTATTAGGAACCGATGTCGGTTTTGGTCAATTTAGAAAGTCTGGCTCTGTCCCTCtggggctggggggtgggggggctacAGTGCTGATTTCAAATGCCCACTAAGGGACAGAATGAAACTCCTCCGCTAATAGACGGGTTGAAATGCCCAGTCTTTAGAGGCGGATGATTTGGTGTGACCTGTTAGACTGTGGCTCTCGGGGACCGAGTCTGGACACCACTGTCCTGCATGCAGaccgccccccccacccggGGTTTAAACATGATCATTTAAAGCCTGTTCACCGCCAGCCGCCAACCTGAACCCCGCAGTGGACGCCTGGAGTGCAGACACAGGTCAAGTACACATATGTATAAAACatctgatttaaaacaaaactccaCAATGATATGTCGAATCAAAAACATGCCCTTCAAGAACGTTTTTGAGACGCGCCCTCTCCACACACCCCCCTACAGGCCGCGAGAGGAACTGCCCCTCTGCCCCGGGCCCCTACGGCGCAGGTGAGCATGCCCAGTCCGAGGCGCCGGGGCCGACCGCGTCCGAACCCACACAGCAAGCCGTCCAGTTAGGTTGAGTTACAGATATGGAgacttgtttctgtttttacagtaaatacattcagTAGCAGATTAGGATGGACAACGTTCCTGCCTCCCGCCCCACCTCCACCCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72563 lncRNA downstream 309468 42696897 ~ 42697133 (-) True G58039
TU72547 lncRNA downstream 332894 42648850 ~ 42673707 (-) False G58025
TU72510 lncRNA downstream 466488 42539439 ~ 42540113 (-) True G57998
TU72500 lncRNA downstream 528489 42477721 ~ 42478112 (-) True G57988
TU72494 lncRNA downstream 537842 42468185 ~ 42468759 (-) True G57982
TU72810 lncRNA upstream 377070 43387183 ~ 43387918 (-) True G58246
TU72857 lncRNA upstream 465720 43475833 ~ 43476088 (-) True G58277
TU72932 lncRNA upstream 521322 43531435 ~ 43547585 (-) True G58336
TU72933 lncRNA upstream 521322 43531435 ~ 43568662 (-) False G58336
TU72977 lncRNA upstream 860241 43870354 ~ 43871117 (-) True G58374
AMCG00009629 mRNA downstream 63922 42933117 ~ 42942679 (-) True AMCG00009629
AMCG00009630 mRNA downstream 75387 42927576 ~ 42931214 (-) True AMCG00009630
AMCG00009623 mRNA downstream 142969 42857803 ~ 42863632 (-) True AMCG00009623
AMCG00009624 mRNA downstream 170308 42813044 ~ 42836293 (-) True AMCG00009624
AMCG00009621 mRNA downstream 195381 42799045 ~ 42811220 (-) True AMCG00009621
AMCG00009637 mRNA upstream 207635 43217748 ~ 43219999 (-) True AMCG00009637
AMCG00009638 mRNA upstream 268430 43278543 ~ 43286068 (-) True AMCG00009638
AMCG00009645 mRNA upstream 286946 43297059 ~ 43300524 (-) True AMCG00009645
AMCG00009641 mRNA upstream 308722 43318835 ~ 43331478 (-) True AMCG00009641
AMCG00009643 mRNA upstream 322318 43332431 ~ 43338522 (-) True AMCG00009643
TU72548 other downstream 332894 42669127 ~ 42673707 (-) True G58025
TU71924 other downstream 2849130 40148725 ~ 40157471 (-) False AMCG00009521
TU71520 other downstream 4169037 38835316 ~ 38837564 (-) False AMCG00009472
TU71449 other downstream 4423781 38580285 ~ 38582820 (-) True G57155
TU70990 other downstream 5786525 37215960 ~ 37220076 (-) True G56800
TU72928 other upstream 472308 43482421 ~ 43945297 (-) True G58333
TU73015 other upstream 979398 43989511 ~ 43995654 (-) True AMCG00009672
TU73231 other upstream 1498140 44508253 ~ 44512249 (-) False AMCG00009697
TU73235 other upstream 1531781 44541894 ~ 44542809 (-) True G58584
TU73240 other upstream 1555956 44566069 ~ 44566834 (-) True G58589

Expression Profile