RNA id: TU72857


Basic Information

Item Value
RNA id TU72857
length 256
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G58277
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 43475833 ~ 43476088 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aCTAACTTACTAattttttttgaacatgcaactgcagctgtagatcacgcgaaatgacaatgacccaaaacacacagccaaggcaacaaaggagtggttcaagaagaagcacattaaggtcctggagtggcctagccagtctccagaccttaatcccatagaaaatctgtggagggagctgaaggttcgagttgtcaaacgtcagcctcgaaaccttaatgacttggagaggatctgcaaagaggagtgggacaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72810 lncRNA downstream 87915 43387183 ~ 43387918 (-) True G58246
TU72703 lncRNA downstream 465720 43006601 ~ 43010113 (-) True G58149
TU72704 lncRNA downstream 465768 43006601 ~ 43010065 (-) False G58149
TU72563 lncRNA downstream 778700 42696897 ~ 42697133 (-) True G58039
TU72547 lncRNA downstream 802126 42648850 ~ 42673707 (-) False G58025
TU72932 lncRNA upstream 55347 43531435 ~ 43547585 (-) True G58336
TU72933 lncRNA upstream 55347 43531435 ~ 43568662 (-) False G58336
TU72977 lncRNA upstream 394266 43870354 ~ 43871117 (-) True G58374
TU72982 lncRNA upstream 397693 43873781 ~ 43875739 (-) True G58377
TU72997 lncRNA upstream 462833 43938921 ~ 43947522 (-) True G58391
AMCG00009651 mRNA downstream 19946 43444573 ~ 43455887 (-) True AMCG00009651
AMCG00009649 mRNA downstream 36612 43434412 ~ 43439221 (-) True AMCG00009649
AMCG00009648 mRNA downstream 44278 43423905 ~ 43431555 (-) True AMCG00009648
AMCG00009642 mRNA downstream 102562 43345226 ~ 43373271 (-) True AMCG00009642
AMCG00009644 mRNA downstream 134168 43338664 ~ 43341665 (-) True AMCG00009644
AMCG00009650 mRNA upstream 36357 43512445 ~ 43522137 (-) True AMCG00009650
AMCG00009652 mRNA upstream 129585 43605673 ~ 43644666 (-) True AMCG00009652
AMCG00009657 mRNA upstream 251118 43727206 ~ 43731531 (-) True AMCG00009657
AMCG00009665 mRNA upstream 416362 43892450 ~ 43895658 (-) True AMCG00009665
AMCG00009663 mRNA upstream 426207 43902295 ~ 43918770 (-) True AMCG00009663
TU72548 other downstream 802126 42669127 ~ 42673707 (-) True G58025
TU71924 other downstream 3318362 40148725 ~ 40157471 (-) False AMCG00009521
TU71520 other downstream 4638269 38835316 ~ 38837564 (-) False AMCG00009472
TU71449 other downstream 4893013 38580285 ~ 38582820 (-) True G57155
TU70990 other downstream 6255757 37215960 ~ 37220076 (-) True G56800
TU72928 other upstream 6333 43482421 ~ 43945297 (-) True G58333
TU73015 other upstream 513423 43989511 ~ 43995654 (-) True AMCG00009672
TU73231 other upstream 1032165 44508253 ~ 44512249 (-) False AMCG00009697
TU73235 other upstream 1065806 44541894 ~ 44542809 (-) True G58584
TU73240 other upstream 1089981 44566069 ~ 44566834 (-) True G58589

Expression Profile