RNA id: TU72871


Basic Information

Item Value
RNA id TU72871
length 1550
lncRNA type intronic
GC content 0.36
exon number 2
gene id G58291
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 43678351 ~ 43680953 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCAACTGCAAAAgacctttattgtattttaaactcaaaatgtaatagtcaacataatatttgtatgcatccaattaaacacaattgtgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtagggtatttatttatatatttatttatttgttaaattatttatttttacttaaaagtgtattcaaaatgaatacaagaTTTCCACTTGATAGACCAGATTATCACTTAAGTCACTTAGGTctacatcacttaaaattatGGTATTTGTTAACAAAGTgttaatttccagatatctgcTGTGGTAACATCTACCATCTAGCTATCTTTTTTGAGTAACGTGTTTACAGAATTCACAAATGTATATGCACATACTTCTCCCTCATGATCCCAATTACATTGACAAACCAACATTATAGCAATGTaatactaaactaaactaaataatagTTCCAGAAATAAAAGTGCACATTTGTGTTGcttaaatctgtcctgtgtagccATGTGTGTTAACAGCATGAATATACAGGGGTGCACATAACTGGTGCGCATGTGCAGCCTAAATCACAAATGTGCGGGCAAATTTGTTTTGGGATTCGCACCAACTACCAAAGCtgtttctatgtattttttccatagttaataaaatgttgtggggaaaaaaaattcaaaaaagcagcagaaattaaataattaggcACACAGGGCGACATTCCCAGACTGGGAATTGACGGGCccatcaaacaaaaaaattgacTATATAGAAATAGGGCAGATGAAGTCAGACAATTCAGTGTTGAATTCACACAGGCTCTGTTTTTAACTAGGAAGGGCTAGAGGTCGCAACAAGGGGGACTTCACTGACATTGGAAGCAAATTATAAATTTGTCAAATAGAGATGGACTCAGTGATAAGGAAACTGAAGTAACAGGAAGCAGCATTTGTAAATATCTCCCACATTGCAACAACTGTGAAAAATGGATGTAATAGCTGTTGAAACACTCTATATTTTAGtacaagcattttaaaatcactggTTCTTGCAATTTCATACATGCTATGTCCATAGAACACCACCTTTTTCGAcagttggtttattttttacactcCCTATAGTGATGAGTATGTTGACTGTAATAATACAAAGTAACTGTACTGTAGACAATGgagaaaattaatgtatttaaaacgtATTAAAACTGTGTAGAAAGGCATCCAGGGTAACATCATACAAAGCACACAGACATGGTGTTTTAGACTGATCAGCCATCAACATGGTACAAAAGCTGATATCAATATTTGTGATGAACAGTTCATGAGGTCATTGATatgaaaaataagcaattttggttttgtttgtttttggctcCTGCCATTAAGTTGTGCTAACTGCTCTTGTTTCACAGATTCTTTTGTGAACTGATTTGCAGGAGCTGTCGTACCAACTCCattccagacacacacaattctCCCCTGAAGGATCTTCCACCATCCAGTTATCAGGTTCGCTGGGCTGACCGGTTCTCTGGAGCCAGTAT

Function

GO: NA

KEGG:

id description
ko03010 Ribosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72836 lncRNA upstream 234034 43439399 ~ 43444317 (+) False AMCG00009647
TU72773 lncRNA upstream 353772 43318916 ~ 43324579 (+) True G58214
TU72776 lncRNA upstream 367289 43309860 ~ 43311062 (+) True G58215
TU72753 lncRNA upstream 428710 43249403 ~ 43249641 (+) True G58195
TU72734 lncRNA upstream 465323 43212710 ~ 43213028 (+) True G58178
TU72891 lncRNA downstream 192828 43873781 ~ 43875723 (+) True G58304
TU72908 lncRNA downstream 228635 43909588 ~ 43915760 (+) True G58317
TU72912 lncRNA downstream 240521 43921474 ~ 43926631 (+) True G58319
TU73083 lncRNA downstream 488532 44169485 ~ 44169789 (+) True G58467
TU73142 lncRNA downstream 644198 44325151 ~ 44325573 (+) True G58510
AMCG00009647 mRNA upstream 233931 43436990 ~ 43444420 (+) True AMCG00009647
AMCG00009646 mRNA upstream 253501 43416831 ~ 43424850 (+) True AMCG00009646
AMCG00009640 mRNA upstream 359850 43315628 ~ 43318501 (+) True AMCG00009640
AMCG00009635 mRNA upstream 404979 43267927 ~ 43273372 (+) True AMCG00009635
AMCG00009634 mRNA upstream 411452 43258520 ~ 43266899 (+) True AMCG00009634
AMCG00009654 mRNA downstream 55644 43736597 ~ 43740863 (+) True AMCG00009654
AMCG00009653 mRNA downstream 62501 43743454 ~ 43748128 (+) True AMCG00009653
AMCG00009655 mRNA downstream 70530 43751483 ~ 43756359 (+) True AMCG00009655
AMCG00009658 mRNA downstream 153930 43834883 ~ 43852529 (+) True AMCG00009658
AMCG00009659 mRNA downstream 178128 43859081 ~ 43873704 (+) True AMCG00009659
TU72303 other upstream 1600110 42036018 ~ 42078241 (+) True G57830
TU72035 other upstream 2683692 40990802 ~ 40994659 (+) True G57604
TU71881 other upstream 3573403 40102383 ~ 40104948 (+) False AMCG00009516
TU71802 other upstream 3729151 39948006 ~ 39949200 (+) True G57430
TU71670 other upstream 4241356 39434900 ~ 39436995 (+) True AMCG00009480
TU72919 other downstream 251999 43932952 ~ 43935762 (+) True G58324
TU73161 other downstream 705544 44386497 ~ 44387964 (+) False G58522
TU73232 other downstream 886412 44567365 ~ 44570531 (+) True AMCG00009694
TU73244 other downstream 903609 44584562 ~ 44599328 (+) False AMCG00009700
TU73251 other downstream 951797 44632750 ~ 44651967 (+) True G58600

Expression Profile