RNA id: TU72891


Basic Information

Item Value
RNA id TU72891
length 1920
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G58304
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 43873781 ~ 43875723 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aaaaaaaaaaaaaacaaaaaaaaaaacaccattcaCAGCGACACGGGAGGCGGAATGACACCAATCACTCGAGACAGGAGGTGGGGTGGGCGAGCCACAGGACCTTTTTCtgatgtggggtggggggtgctcaAACACAGGTTTTTCTCTATATATCCGTGTGGAGCCACATCTGCAGCAGGACTCGTAGGAAAAGAGTAGCATGCCAGCAGAGTCCTAGACTACGACCTGCGCTCCCGGGGCCGGGCTGATGCACTGCCTGGGCCGGGGACGAGCTGGGGCCACACCTGACGCAGGCGCCCGTCTTCACAATCCAGAGATGCTTCCGTCTTAGGCAattaaaccccccccccctcccaacaCTGCTACCACACCCTAATGCCCTTTTGGTCTTGTTTGTCTGGTCTCAGCGCTGCAGCCCGTCTACCCATAGTTCTCTCTGCTGCTTCGCTCTACGGTTCCCTACCGTTTCTCTTGGATTCACCGGTTCAGGGAGGAGGGGAATGTGACTAATTCTGCATGCCTTCACTTTCTACCTCCTGCGAAAACCTCCCTGTCCGACTCGTCTCGGACGCTCAGGTCTTCGGGAAGTCCTCGTTCACGGCTGTGGAGGCCGACTTCCCCGCTGCCCCCGCTCTTCAGCTCTGTGCCTTCCGGGACATCCCCACCCTGCCCCGCCCCACACAGCAGCTCGCTCTGATCAGACCCACTGCAGCCCCACGCTTTCACATTCACCAAATGCTTCGTACTCTAGTTGCACTACTTGGGAATCTGCAAGAATCGATGCAGGCagttttctgaaaatcaaaCGATTGTCCTAGgggtgtttttatttccctAAAAAGCTTAATTTGTATCTTTGCTTAGATGTCGGctttcatataatttttttttccttcagcaaAGCAAAGCTGCAGTCTGATTCCCTCCCAAGATTTTATTAAAGAACCAGTTCCCACATCCTCGAACAAAttacactttaatttattaacGCAGAGCTTCACTAAAGTGTGATTGGTAACTGGGGAGTTTTAAACTGCGGAGCAAGCTCACCTGTCCGCAAGCCCCTCCCCAACCCCAACCTGATTGGAGCTGCGGTTTGGTTTGTGAATATTCCTTTCCTGTGATTGGTTGTTTTTGGTGAAGGGACAGGGGCTCGCACGATAAAgggttttttgtttattttgtattttattttttggtcagAACTCTGGCACACCTTGTAGACTTGACCTCTTATTCTTTCTACTTTGTTAAACTCCAGATAcgttacagtaaaacaaattaatactaAGACGAGAGTATTCTGTAATAGGAGCACTTAGTGTGACAGTGAATAAAGCTGTAAAAGACACGTGggcttttgtgttttcttactGCTGCGATGCATGTTGTGTCCAAACACGACTTCCCTTCATCTGTGATCGTCAGTCGGAGCACGATGCTCAACCTCCAGGTCTCAAACATTCAGACAGCCGCTCCCATTACCACCAGCCTtctaacatttttataaaatttgatttaatcccttACCTTTAGTTTCTTTAAATTGAGAGCTCAGAGTCCAAAACACTTAAGTTAGAGTAACTTGACACCATATTTAGCCTTTTACACGGTATAGATGATGCTGATCTCTTCACTGAGAGGTCACAAGCAAACACTCAAATTCCCTAGATTTCCACAATGAGAAGAGGGGGGCCAAATGTTGAAGGATTACAATTCATACATGACCATTACACCCACTGGTCACCAGTAATGTTACTTACAGCAGGCTGTGGAAGGGATGGAGAGTTGAGATTTCACTCAAAGCTGCCAGTGTTTTGTCAACGAATCATTAGAATCAAAGACCTGGTCACAAAACACCCAGGATACCTTCTGGTGGCCAGAAATATGTATAActttaatctaaataaaaataaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72871 lncRNA upstream 192828 43678351 ~ 43680953 (+) True G58291
TU72836 lncRNA upstream 429464 43439399 ~ 43444317 (+) False AMCG00009647
TU72773 lncRNA upstream 549202 43318916 ~ 43324579 (+) True G58214
TU72776 lncRNA upstream 562719 43309860 ~ 43311062 (+) True G58215
TU72753 lncRNA upstream 624140 43249403 ~ 43249641 (+) True G58195
TU72908 lncRNA downstream 33865 43909588 ~ 43915760 (+) True G58317
TU72912 lncRNA downstream 45751 43921474 ~ 43926631 (+) True G58319
TU73083 lncRNA downstream 293762 44169485 ~ 44169789 (+) True G58467
TU73142 lncRNA downstream 449428 44325151 ~ 44325573 (+) True G58510
TU73145 lncRNA downstream 452548 44328271 ~ 44360062 (+) True G58513
AMCG00009659 mRNA upstream 77 43859081 ~ 43873704 (+) True AMCG00009659
AMCG00009658 mRNA upstream 21252 43834883 ~ 43852529 (+) True AMCG00009658
AMCG00009655 mRNA upstream 117422 43751483 ~ 43756359 (+) True AMCG00009655
AMCG00009653 mRNA upstream 125653 43743454 ~ 43748128 (+) True AMCG00009653
AMCG00009654 mRNA upstream 132918 43736597 ~ 43740863 (+) True AMCG00009654
AMCG00009662 mRNA downstream 4306 43880029 ~ 43890471 (+) True AMCG00009662
AMCG00009660 mRNA downstream 22143 43897866 ~ 43902765 (+) True AMCG00009660
AMCG00009661 mRNA downstream 64570 43940293 ~ 43951629 (+) True AMCG00009661
AMCG00009670 mRNA downstream 102869 43978592 ~ 43992050 (+) True AMCG00009670
AMCG00009668 mRNA downstream 131191 44006914 ~ 44013300 (+) True AMCG00009668
TU72303 other upstream 1795540 42036018 ~ 42078241 (+) True G57830
TU72035 other upstream 2879122 40990802 ~ 40994659 (+) True G57604
TU71881 other upstream 3768833 40102383 ~ 40104948 (+) False AMCG00009516
TU71802 other upstream 3924581 39948006 ~ 39949200 (+) True G57430
TU71670 other upstream 4436786 39434900 ~ 39436995 (+) True AMCG00009480
TU72919 other downstream 57229 43932952 ~ 43935762 (+) True G58324
TU73161 other downstream 510774 44386497 ~ 44387964 (+) False G58522
TU73232 other downstream 691642 44567365 ~ 44570531 (+) True AMCG00009694
TU73244 other downstream 708839 44584562 ~ 44599328 (+) False AMCG00009700
TU73251 other downstream 757027 44632750 ~ 44651967 (+) True G58600

Expression Profile