RNA id: TU72928


Basic Information

Item Value
RNA id TU72928
length 609
RNA type TUCP
GC content 0.42
exon number 6
gene id G58333
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 43482421 ~ 43945297 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

NNGGACACAGGTCCAGTCCAGAGTCTACATCAGCGagggATTCTTCAAGCCAGCTCAACCCTGGATCATCTctactgtgtgttttgttctgttcagtGTAGTTTGTCTAATCTTTATCATATATGTCTTCAAGATGAGAGAAGgcaGACGAAAGCTACATCAATTATATTACACGGACAAAAGTGATATTTACAAAGccaACATTACAATGGATCCTGAAACCAGCCACTCAAAACTGAAAGTCTCTGAAGATGGAAAATGTGTGCAATTCAACAAGGACCAAAAAGGTGTCCCAGACAACCCAAAGAGATACAAATACTGGCCGGGTGTTCTGGGATNNNNNNNATTCTCCAGTGGGAAGCATTACTGGGAGGTGAAAGTTGATGGTTTGGATCACTGGGATCTCGGGGTGGCCTGCAATTCTGTAAACAAGAATTCTGTAAGCATCGAACCCAATTTTGGCTACTGGAGCATCTGGTTTTCATACAATAAGTACCATGCTCTGGACATATCCAAACCCTTTATTCAGACTAAAGGAACAGTCCACACAGTGGGTGTATATCTAGACTATGATGGGGGGAAGGTCTCTTATTATGATGCGATTAACAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72857 lncRNA downstream 6333 43475833 ~ 43476088 (-) True G58277
TU72810 lncRNA downstream 94503 43387183 ~ 43387918 (-) True G58246
TU72703 lncRNA downstream 472308 43006601 ~ 43010113 (-) True G58149
TU72704 lncRNA downstream 472356 43006601 ~ 43010065 (-) False G58149
TU72563 lncRNA downstream 785288 42696897 ~ 42697133 (-) True G58039
TU73001 lncRNA upstream 26967 43972264 ~ 43972630 (-) True G58394
TU73002 lncRNA upstream 31988 43977285 ~ 43977486 (-) True G58395
TU73065 lncRNA upstream 151979 44097276 ~ 44104710 (-) True G58452
TU73069 lncRNA upstream 164039 44109336 ~ 44109715 (-) True G58456
TU73070 lncRNA upstream 164672 44109969 ~ 44110283 (-) True G58457
AMCG00009651 mRNA downstream 26534 43444573 ~ 43455887 (-) True AMCG00009651
AMCG00009649 mRNA downstream 43200 43434412 ~ 43439221 (-) True AMCG00009649
AMCG00009648 mRNA downstream 50866 43423905 ~ 43431555 (-) True AMCG00009648
AMCG00009642 mRNA downstream 109150 43345226 ~ 43373271 (-) True AMCG00009642
AMCG00009644 mRNA downstream 140756 43338664 ~ 43341665 (-) True AMCG00009644
AMCG00009672 mRNA upstream 46417 43991714 ~ 43994848 (-) False AMCG00009672
AMCG00009671 mRNA upstream 51415 43996712 ~ 44006803 (-) True AMCG00009671
AMCG00009677 mRNA upstream 106113 44051410 ~ 44064467 (-) True AMCG00009677
AMCG00009678 mRNA upstream 128553 44073850 ~ 44074116 (-) True AMCG00009678
AMCG00009683 mRNA upstream 311118 44256415 ~ 44264122 (-) True AMCG00009683
TU72548 other downstream 808714 42669127 ~ 42673707 (-) True G58025
TU71924 other downstream 3324950 40148725 ~ 40157471 (-) False AMCG00009521
TU71520 other downstream 4644857 38835316 ~ 38837564 (-) False AMCG00009472
TU71449 other downstream 4899601 38580285 ~ 38582820 (-) True G57155
TU70990 other downstream 6262345 37215960 ~ 37220076 (-) True G56800
TU73015 other upstream 44214 43989511 ~ 43995654 (-) True AMCG00009672
TU73231 other upstream 562956 44508253 ~ 44512249 (-) False AMCG00009697
TU73235 other upstream 596597 44541894 ~ 44542809 (-) True G58584
TU73240 other upstream 620772 44566069 ~ 44566834 (-) True G58589
TU73318 other upstream 837621 44782918 ~ 44785134 (-) True G58653

Expression Profile