RNA id: TU72977


Basic Information

Item Value
RNA id TU72977
length 512
lncRNA type inter_gene
GC content 0.58
exon number 2
gene id G58374
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 43870354 ~ 43871117 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AACCACCACCTACCCGGAAACATCAAACCCACAGAAAACCACCACCCCCCCAAGTCTGCACTGATTCCACTCGCACTGCCATCTCAGATCACTGGAAGTGATGGGAAGTCTTAAATGTGGTCCTGCAGGCTGTGAGGATCACACTAAGGGCACAGTGACCCGGCTGGGGGAGCCTGTACCTAAACCCGTCACTCCCCGGCGTTTCGCAATGACGTACCTTCTCAAACTCGATGGCGCACAGTTTAAACCTGGACAGGTTGTCCGAGCTGGGCAGCAGGGtcttcagctcctccagtcTGGAGTCGTCTGAGAGATAAACGCcTACGGAGGAGTTGGCGCTCTGGAGTTCCTGGTCGGACACGTGGATCTTCACACCGGATTTGGGAGTGAACACTGGCACCTTGACTGACTCCAGGATGCGGACCACGCCCGCCCGGTCTGTGGAGCCCTCCAGGCCGTAAGTCTGGGCGTAGAGATTGGCGGCCGCCACCACGTAGTCCATGTGCAGCTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72933 lncRNA downstream 301692 43531435 ~ 43568662 (-) False G58336
TU72932 lncRNA downstream 322769 43531435 ~ 43547585 (-) True G58336
TU72857 lncRNA downstream 394266 43475833 ~ 43476088 (-) True G58277
TU72810 lncRNA downstream 482436 43387183 ~ 43387918 (-) True G58246
TU72703 lncRNA downstream 860241 43006601 ~ 43010113 (-) True G58149
TU72982 lncRNA upstream 2664 43873781 ~ 43875739 (-) True G58377
TU72997 lncRNA upstream 67804 43938921 ~ 43947522 (-) True G58391
TU73001 lncRNA upstream 101147 43972264 ~ 43972630 (-) True G58394
TU73002 lncRNA upstream 106168 43977285 ~ 43977486 (-) True G58395
TU73065 lncRNA upstream 226159 44097276 ~ 44104710 (-) True G58452
AMCG00009657 mRNA downstream 138823 43727206 ~ 43731531 (-) True AMCG00009657
AMCG00009652 mRNA downstream 225688 43605673 ~ 43644666 (-) True AMCG00009652
AMCG00009650 mRNA downstream 348217 43512445 ~ 43522137 (-) True AMCG00009650
AMCG00009651 mRNA downstream 414467 43444573 ~ 43455887 (-) True AMCG00009651
AMCG00009649 mRNA downstream 431133 43434412 ~ 43439221 (-) True AMCG00009649
AMCG00009665 mRNA upstream 21333 43892450 ~ 43895658 (-) True AMCG00009665
AMCG00009663 mRNA upstream 31178 43902295 ~ 43918770 (-) True AMCG00009663
AMCG00009666 mRNA upstream 53304 43924421 ~ 43930718 (-) True AMCG00009666
AMCG00009664 mRNA upstream 62110 43933227 ~ 43935758 (-) True AMCG00009664
AMCG00009672 mRNA upstream 120597 43991714 ~ 43994848 (-) False AMCG00009672
TU72548 other downstream 1196647 42669127 ~ 42673707 (-) True G58025
TU71924 other downstream 3712883 40148725 ~ 40157471 (-) False AMCG00009521
TU71520 other downstream 5032790 38835316 ~ 38837564 (-) False AMCG00009472
TU71449 other downstream 5287534 38580285 ~ 38582820 (-) True G57155
TU70990 other downstream 6650278 37215960 ~ 37220076 (-) True G56800
TU73015 other upstream 118394 43989511 ~ 43995654 (-) True AMCG00009672
TU73231 other upstream 637136 44508253 ~ 44512249 (-) False AMCG00009697
TU73235 other upstream 670777 44541894 ~ 44542809 (-) True G58584
TU73240 other upstream 694952 44566069 ~ 44566834 (-) True G58589
TU73318 other upstream 911801 44782918 ~ 44785134 (-) True G58653

Expression Profile