RNA id: TU72982


Basic Information

Item Value
RNA id TU72982
length 1936
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G58377
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 43873781 ~ 43875739 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCACtttaacaatgcatttatttttatttagattaaagTTATACATATTTCTGGCCACCAGAAGGTATCCTGGGTGTTTTGTGACCAGGTCTTTGATTCTAATGATTCGTTGACAAAACACTGGCAGCTTTGAGTGAAATCTCAACTCTCCATCCCTTCCACAGCCTGCTGTAAGTAACATTACTGGTGACCAGTGGGTGTAATGGTCATGTATGAATTGTAATCCTTCAACATTTGGCCCCCCTCTTCTCATTGTGGAAATCTAGGGAATTTGAGTGTTTGCTTGTGACCTCTCAGTGAAGAGATCAGCATCATCTATACCGTGTAAAAGGCTAAATATGGTGTCAAGTTACTCTAACTTAAGTGTTTTGGACTCTGAGCTCTCAATTTAAAGAAACTAAAGGTaagggattaaatcaaattttataaaaatgttagaAGGCTGGTGGTAATGGGAGCGGCTGTCTGAATGTTTGAGACCTGGAGGTTGAGCATCGTGCTCCGACTGACGATCACAGATGAAGGGAAGTCGTGTTTGGACACAACATGCATCGCAGCagtaagaaaacacaaaagccCACGTGTCTTTTACAGCTTTATTCACTGTCACACTAAGTGCTCCTATTACAGAATACTCTCGTCTtagtattaatttgttttactgtaacgTATCTGGAGTTTAACAAAGTAGAAAGAATAAGAGGTCAAGTCTACAAGGTGTGCCAGAGTTctgaccaaaaaataaaatacaaaataaacaaaaaacccTTTATCGTGCGAGCCCCTGTCCCTTCACCAAAAACAACCAATCACAGGAAAGGAATATTCACAAACCAAACCGCAGCTCCAATCAGGTTGGGGTTGGGGAGGGGCTTGCGGACAGGTGAGCTTGCTCCGCAGTTTAAAACTCCCCAGTTACCAATCACACTTTAGTGAAGCTCTGCgttaataaattaaagtgtaaTTTGTTCGAGGATGTGGGAACTGGTTCTTTAATAAAATCTTGGGAGGGAATCAGACTGCAGCTTTGCTttgctgaaggaaaaaaaaattatatgaaagCCGACATCTAAGCAAAGATACAAATTAAGCTTTTTagggaaataaaaacacccCTAGGACAATCGtttgattttcagaaaactGCCTGCATCGATTCTTGCAGATTCCCAAGTAGTGCAACTAGAGTACGAAGCATTTGGTGAATGTGAAAGCGTGGGGCTGCAGTGGGTCTGATCAGAGCGAGCTGCTGTGTGGGGCGGGGCAGGGTGGGGATGTCCCGGAAGGCACAGAGCTGAAGAGCGGGGGCAGCGGGGAAGTCGGCCTCCACAGCCGTGAACGAGGACTTCCCGAAGACCTGAGCGTCCGAGACGAGTCGGACAGGGAGGTTTTCGCAGGAGGTAGAAAGTGAAGGCATGCAGAATTAGTCACATTCCCCTCCTCCCTGAACCGGTGAATCCAAGAGAAACGGTAGGGAACCGTAGAGCGAAGCAGCAGAGAGAACTATGGGTAGACGGGCTGCAGCGCTGAGACCAGACAAACAAGACCAAAAGGGCATTAGGGTGTGGTAGCAGtgttgggagggggggggggtttaatTGCCTAAGACGGAAGCATCTCTGGATTGTGAAGACGGGCGCCTGCGTCAGGTGTGGCCCCAGCTCGTCCCCGGCCCAGGCAGTGCATCAGCCCGGCCCCGGGAGCGCAGGTCGTAGTCTAGGACTCTGCTGGCATGCTACTCTTTTCCTACGAGTCCTGCTGCAGATGTGGCTCCACACGGATATATAGAGAAAAACCTGTGTTtgagcaccccccaccccacatcaGAAAAAGGTCCTGTGGCTCGCCCACCCCACCTCCTGTCTCGAGTGATTGGTGTCATTCCGCCTCCCGTGTCGCTGtgaatggtgtttttttttttgtttttttttttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72977 lncRNA downstream 2664 43870354 ~ 43871117 (-) True G58374
TU72933 lncRNA downstream 305119 43531435 ~ 43568662 (-) False G58336
TU72932 lncRNA downstream 326196 43531435 ~ 43547585 (-) True G58336
TU72857 lncRNA downstream 397693 43475833 ~ 43476088 (-) True G58277
TU72810 lncRNA downstream 485863 43387183 ~ 43387918 (-) True G58246
TU72997 lncRNA upstream 63182 43938921 ~ 43947522 (-) True G58391
TU73001 lncRNA upstream 96525 43972264 ~ 43972630 (-) True G58394
TU73002 lncRNA upstream 101546 43977285 ~ 43977486 (-) True G58395
TU73065 lncRNA upstream 221537 44097276 ~ 44104710 (-) True G58452
TU73069 lncRNA upstream 233597 44109336 ~ 44109715 (-) True G58456
AMCG00009657 mRNA downstream 142250 43727206 ~ 43731531 (-) True AMCG00009657
AMCG00009652 mRNA downstream 229115 43605673 ~ 43644666 (-) True AMCG00009652
AMCG00009650 mRNA downstream 351644 43512445 ~ 43522137 (-) True AMCG00009650
AMCG00009651 mRNA downstream 417894 43444573 ~ 43455887 (-) True AMCG00009651
AMCG00009649 mRNA downstream 434560 43434412 ~ 43439221 (-) True AMCG00009649
AMCG00009665 mRNA upstream 16711 43892450 ~ 43895658 (-) True AMCG00009665
AMCG00009663 mRNA upstream 26556 43902295 ~ 43918770 (-) True AMCG00009663
AMCG00009666 mRNA upstream 48682 43924421 ~ 43930718 (-) True AMCG00009666
AMCG00009664 mRNA upstream 57488 43933227 ~ 43935758 (-) True AMCG00009664
AMCG00009672 mRNA upstream 115975 43991714 ~ 43994848 (-) False AMCG00009672
TU72548 other downstream 1200074 42669127 ~ 42673707 (-) True G58025
TU71924 other downstream 3716310 40148725 ~ 40157471 (-) False AMCG00009521
TU71520 other downstream 5036217 38835316 ~ 38837564 (-) False AMCG00009472
TU71449 other downstream 5290961 38580285 ~ 38582820 (-) True G57155
TU70990 other downstream 6653705 37215960 ~ 37220076 (-) True G56800
TU73015 other upstream 113772 43989511 ~ 43995654 (-) True AMCG00009672
TU73231 other upstream 632514 44508253 ~ 44512249 (-) False AMCG00009697
TU73235 other upstream 666155 44541894 ~ 44542809 (-) True G58584
TU73240 other upstream 690330 44566069 ~ 44566834 (-) True G58589
TU73318 other upstream 907179 44782918 ~ 44785134 (-) True G58653

Expression Profile