RNA id: TU73002


Basic Information

Item Value
RNA id TU73002
length 202
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G58395
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 43977285 ~ 43977486 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCCCTTTCCCCTCTCCGCCGCTCACAGCTGAACGATACTCTGAATCTTACACAGAGCGCTCAGCTTCTGACGCTGATGGCAACACGGGGCCGGCTCCGAGCCTGAGGAAGACCATGAGGTAAttcaaactgatttaatttctaTACTGTGAAATGTCAGATTGAAAGTGGTTTCTGTtcttaatgtttgtattgtttatgta

Function

GO:

id name namespace
GO:0072329 monocarboxylic acid catabolic process biological_process
GO:0017001 antibiotic catabolic process biological_process
GO:0019541 propionate metabolic process biological_process
GO:0019543 propionate catabolic process biological_process
GO:0009062 fatty acid catabolic process biological_process
GO:0019626 short-chain fatty acid catabolic process biological_process
GO:0046459 short-chain fatty acid metabolic process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73001 lncRNA downstream 4655 43972264 ~ 43972630 (-) True G58394
TU72997 lncRNA downstream 29763 43938921 ~ 43947522 (-) True G58391
TU72982 lncRNA downstream 101546 43873781 ~ 43875739 (-) True G58377
TU72977 lncRNA downstream 106168 43870354 ~ 43871117 (-) True G58374
TU72933 lncRNA downstream 408623 43531435 ~ 43568662 (-) False G58336
TU73065 lncRNA upstream 119790 44097276 ~ 44104710 (-) True G58452
TU73069 lncRNA upstream 131850 44109336 ~ 44109715 (-) True G58456
TU73070 lncRNA upstream 132483 44109969 ~ 44110283 (-) True G58457
TU73073 lncRNA upstream 138164 44115650 ~ 44121067 (-) True G58459
TU73143 lncRNA upstream 347671 44325157 ~ 44325573 (-) True G58511
AMCG00009664 mRNA downstream 41527 43933227 ~ 43935758 (-) True AMCG00009664
AMCG00009666 mRNA downstream 46567 43924421 ~ 43930718 (-) True AMCG00009666
AMCG00009663 mRNA downstream 58515 43902295 ~ 43918770 (-) True AMCG00009663
AMCG00009665 mRNA downstream 81627 43892450 ~ 43895658 (-) True AMCG00009665
AMCG00009657 mRNA downstream 245754 43727206 ~ 43731531 (-) True AMCG00009657
AMCG00009672 mRNA upstream 14228 43991714 ~ 43994848 (-) False AMCG00009672
AMCG00009671 mRNA upstream 19226 43996712 ~ 44006803 (-) True AMCG00009671
AMCG00009677 mRNA upstream 73924 44051410 ~ 44064467 (-) True AMCG00009677
AMCG00009678 mRNA upstream 96364 44073850 ~ 44074116 (-) True AMCG00009678
AMCG00009683 mRNA upstream 278929 44256415 ~ 44264122 (-) True AMCG00009683
TU72928 other downstream 31988 43482421 ~ 43945297 (-) True G58333
TU72548 other downstream 1303578 42669127 ~ 42673707 (-) True G58025
TU71924 other downstream 3819814 40148725 ~ 40157471 (-) False AMCG00009521
TU71520 other downstream 5139721 38835316 ~ 38837564 (-) False AMCG00009472
TU71449 other downstream 5394465 38580285 ~ 38582820 (-) True G57155
TU73015 other upstream 12025 43989511 ~ 43995654 (-) True AMCG00009672
TU73231 other upstream 530767 44508253 ~ 44512249 (-) False AMCG00009697
TU73235 other upstream 564408 44541894 ~ 44542809 (-) True G58584
TU73240 other upstream 588583 44566069 ~ 44566834 (-) True G58589
TU73318 other upstream 805432 44782918 ~ 44785134 (-) True G58653

Expression Profile