RNA id: TU73073


Basic Information

Item Value
RNA id TU73073
length 4397
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G58459
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 44115650 ~ 44121067 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGACGACGTCACTCTCTGGGGACAGGAGCCAGCGGTTCATCAGGATGTAGTCGTAGCGGCACGAGTAGTTCTTGGCGGGTGGGACGAAGAAGGTGGCTGAGCCGTTGTGTGTGATCACTGTCTGGGTCCAGCTGTTCTCCACCTTCAGCTGGAAGGAAGCGACCCCGAGCTGCGACTCAGTGGAGCAGGTGACGGCAAACCTGTGCTCTCTTTTCACCTCATCTGTAACTACGCTGATGGAGATGCTGGGCTTCTGGAGGATGgctgtggggggaaaaaaatgaaaacatctaggcaggtctctctctccagtaGAGATGTACCGAATGTTCGGCAACCAAAATTATTCGGCCGAAAATAGCAAAAAAAGCACTTTCGGTGTTCAGCCGAATAAGTGAACAGACCGAATAAATTTTACCcaacaattatgtttttgatgACGCGATCAAATAGCAACCAgctattgctgtttatttaatattcgcTGTAACTCGAACGCACAGTTGTGTTTCCGATCGGAGAGCGGCAgtttgagtgtggtttggacaGGAAAAGCCAATCAtttagtcaagtagattgtataaattagctagataaataggtcttatacattttgcatttcgctgttgtgaccggaaaacattgccacaaggacgctactGTAATGTAACGAAACCTGTCCTAGTAAGGTTGTGTTCTAACTGGATTTGACAGAGTAGCGTGTAGCTGCCACCACCTTTGGTTTACCGAGACGGTCCGGTCGAATAACCCTGGAAGCTAAAGGTAGTTATGTGAAGGGAGAGTGAAATGCCAAGAGGAAATATATAACAAAGTCTTTTTAATAACCAATTACATAAGCTGGGTACACAATGTACAATTTAGGCAAATAGAATAACAATCACAGTATCACTAAACAATCCATAAAAAGTCAATATCCATTAAATAGTTTCTCCCTCAAATCAGTCCTCATACATACAGCCAATTGTTAtactaaaacagcaattaaccttcataaaaaaataaaaaaataaaccatacaataaACACCAATGTAAGTGAAAAGAAACCACAATATAAAAGTCAGATAAAccatacaataaacaaaccaatataaGTTACCACAATTCCAACAATAATTTCAACTATAAAAAACCAATACAAACTCTTCAATGTAAAGTCAAAATtcacaacaaaccaaaaacatgttaattgcGGTCTTAGATCAATTCATTGGAACATAGCCAATAGGATCCAGCAcaatccaatcaatcaatcacttgGCCCTGTTACACAGATTGATTAATAGCAGTATGTTTAAGTCTAATCCACAAGTTAATACATTAGTTAAAGAAACTTATTATGGGCAAGGACTAGTATAAAACCAAgttaaaacaatgaaagcatTTGATCAATTACACATCTCCCGTGTGTCTTCTGAGCACTGCTTATATCCCCATCTGCTCCCGATATGACATCCTGTGATTGGTCGCAATGCTCAAGTCCAATTAGGGTTAATAAGAGCCAATTAAATCAGTGACAGAGCCGAGTGGCTCATCACAGTAAGGCATTTTCGTTGCAGCTCaaagtgaatgaaaatgtataaaaaatttaaaagaaaaacatattggtcggtcaattacagctgtaattgcaaaatattcctttataaaacaaacagtcaCAACCTTTAcgtatagttaatttgaaattgagacaataaaaagttgtgataatgtcgggacaataatacaagagtctgtTCTGATGAAGTGAGGTccgaggggtgggggggtgctgatggattgaggtccaggggggccggggggggtGAAGTCAGGTCCGGGGAGGGGACTGGGTTGGGGGTACTGGTGAAGTGAGGGGAATGAGGGGAATttacaatgaggaaaataagCCCCCCTTTCTTAGTTTTGCCCTGTTTCATATCATTTTCCCCCCATGGCTTCAATTTCTCCCCATAAATGGGGGTTTCCCCCCAATCTGGTAACcctggtttgtttacattgtgtctttgctggcgtgcattgtattgaccaatggaaagtctgtcatcattcctagagattatatatattttacccaACCACCGACCATGACTCTATGAATATGtagccaatccaatgaaatccttttaatgacaTGCAGAAACCCAcagaagggagtagcactgaagaggaagaggagtatgaagagcaataatgtgtcaccatataaaaCCCCTTCTCATTTGTTAGTGTGTctatacagatccccattagctgccatgttatttcgtatgtgattgattcatttgaaaatgatgctctactagcaagtgttataattcaaaaGAATGCAATGTTctgatcaaagaccttataacacttgcaagtagaaactgtgtgggggcatgtttttctatccagatccttttccctcattcACACCTATCTAGTCTGTACCGGTGTGCAATTATCTTttgttatagtgattgattCATTACCTGAATAATTGccacgttttaacatgttcaccacacattttgCATCCTCAGTCAGTTATAGGCCTAATATAGGCTATTCAAGAAATGGGGGGGCTCAAAGatggccaaataaaaatatttttattttactaatttatttattttaagttatattgtgctttgttgGTATAATGTTTGTTGGAATGTTACAAAAATGttcagtgttaaataaatatttttaaattgtagttttgtaattgattttgtctttgaaaagcaagacaaaatagtaaaaagcacatttagactatttaatttatgcaatggtgaaaaaattggcaaaataaatggaaaaaaatgcgAAAAACCACGTTCGCTATTCGGCCTTCGGCcaagtgtttcattatattcGGTTTCGGCTTCGGCCAagaattttcatttcagtgcatCCCTACTCTCCAGTGAACCATGGTGCCATGACTGAAAACGCTGACAATCTTAGAGGTGTGTTACATAGTGTGATGGCCAAGGGGCTGTGGGGCTGTAACAAGACCGGGCTTCTGCTATCAGGAAAGGGGACTGACACATCGGGGGAAGAAAAGGTCAAGGCCATTGGTTTCCAGTCCTGGTCCCCAGGACACTGTTGGATTTCAGGGAGAGTCATGGCTTCTTCCTGTTGCTTTCTGTTACAACCGGGCTCCTCGGTACTACCCTGAACTCAAAATCTGACATACATTGGACAAGCAAGAAAgcatgtaatgtatttgttaatataaatgACTAATCTGATGGGAAAAACCCAGACCGTCTGTGTCGAAACAGGCCTTCAATATCCAGTCCTAAGTGTCCCCTTTTCATAACGTTACACTTACAATACaatctaatacaatacaatacagatgtGTATATTGCCTTTAATCAGAATTCGACTGAAAGTACTTTACTTTACTTCAGATCAGACATCAAATGCCAGGCTGAACAAGGAGGCTGAGGCTTGATTACATACATAGACCCTCGGATACATTTAGGGAGAGAAATCCAGACAAAGAGGACCCTGACAGCTAAATGTTCTCAGTCTTACACAGAACTTTGTCAGAGTTTGGGACAAGCTATCCAGACAGCTCATGGAAGAAATCAGATACACCAGGATCCTCCAGGAAACAGCGTGATTAATTCCTTGGATCAAGTCATAATTGGTTATTGGCATCCAAATTAACTAGATAGGGGAATAGGCTTCCtcttatttaaaaagctttcatatttttcaataaataacaataaaaaaaaaacacttaaatgaatgaataaatacacacacttaCCTGCACACAGAACTCCAGCATCTTCCATGTGACTGCAGTCATGTTTCCCTATCTTCTGGTGTGCACATTGTGTCAGGGTGGATTCGGTGCCCTGACACCGTACCCCATCCAGCCAGATTCTCCCTTTGCCCTTTCCAAACTGGGCCTGGCCCAAAGCGTCCACGGCTCTTGGGCACCCCAGCTCTCTGCACACCACCTCAGCATTGGCCAGGGTCCAGCCATCGTCACACACTGTCCCCCACTGGTCATTGTAATAAACCTCCACTCTCCCAGAGCAGCGCGATTGCCCGTTGACCAATCTGATCTGTGCACCGTctagagacagagaaacacgGCTTTCATGATCTGGGTATACcgcaagaagaagaaaacaagaagaagaatataCTTTGTTGATATGTGAGAGTCCAAAATTccaaaatagactggataggatcctcggatcacttagttattaatggacaccaaacgagcatgatggggcgaatggcctccccTCGattgtcttatgttcttatgttcttaggaAAGTGATCaaagtaatagtaatataattAGTAGTAATACTAGTAGTTGTACAATTCAGGTTAGGAAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73070 lncRNA downstream 5367 44109969 ~ 44110283 (-) True G58457
TU73069 lncRNA downstream 5935 44109336 ~ 44109715 (-) True G58456
TU73065 lncRNA downstream 10940 44097276 ~ 44104710 (-) True G58452
TU73002 lncRNA downstream 138164 43977285 ~ 43977486 (-) True G58395
TU73001 lncRNA downstream 143020 43972264 ~ 43972630 (-) True G58394
TU73143 lncRNA upstream 204090 44325157 ~ 44325573 (-) True G58511
TU73196 lncRNA upstream 359985 44481052 ~ 44488354 (-) True G58548
TU73197 lncRNA upstream 359985 44481052 ~ 44526239 (-) False G58548
TU73236 lncRNA upstream 421876 44542943 ~ 44543177 (-) True G58585
TU73256 lncRNA upstream 537349 44658416 ~ 44659098 (-) True G58605
AMCG00009678 mRNA downstream 41534 44073850 ~ 44074116 (-) True AMCG00009678
AMCG00009677 mRNA downstream 51183 44051410 ~ 44064467 (-) True AMCG00009677
AMCG00009671 mRNA downstream 108847 43996712 ~ 44006803 (-) True AMCG00009671
AMCG00009672 mRNA downstream 120802 43991714 ~ 43994848 (-) False AMCG00009672
AMCG00009664 mRNA downstream 179892 43933227 ~ 43935758 (-) True AMCG00009664
AMCG00009683 mRNA upstream 135348 44256415 ~ 44264122 (-) True AMCG00009683
AMCG00009690 mRNA upstream 163811 44284878 ~ 44293118 (-) True AMCG00009690
AMCG00009693 mRNA upstream 202918 44323985 ~ 44328354 (-) True AMCG00009693
AMCG00009692 mRNA upstream 217996 44339063 ~ 44342291 (-) True AMCG00009692
AMCG00009691 mRNA upstream 225403 44346470 ~ 44354753 (-) True AMCG00009691
TU73015 other downstream 119996 43989511 ~ 43995654 (-) True AMCG00009672
TU72928 other downstream 170353 43482421 ~ 43945297 (-) True G58333
TU72548 other downstream 1441943 42669127 ~ 42673707 (-) True G58025
TU71924 other downstream 3958179 40148725 ~ 40157471 (-) False AMCG00009521
TU71520 other downstream 5278086 38835316 ~ 38837564 (-) False AMCG00009472
TU73231 other upstream 387186 44508253 ~ 44512249 (-) False AMCG00009697
TU73235 other upstream 420827 44541894 ~ 44542809 (-) True G58584
TU73240 other upstream 445002 44566069 ~ 44566834 (-) True G58589
TU73318 other upstream 661851 44782918 ~ 44785134 (-) True G58653
TU73631 other upstream 1199776 45320843 ~ 45323950 (-) True AMCG00009748

Expression Profile