RNA id: TU73143


Basic Information

Item Value
RNA id TU73143
length 417
lncRNA type intronic
GC content 0.39
exon number 1
gene id G58511
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 44325157 ~ 44325573 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

NNNTGTCTTAAAGTGTCCTCAGCACATTCCCTCTTCACTTATAACATTTTCTATAACTCCAGTGTTACTAGACACAGGCTCTgtgttttatctgtttatttaaccCCCCACCTCCGAGAAGAGACGGAGAGTGATGTCGCAGTGAACGGAGGATGATCACTGACCTCTCAATCAGCCCCAGATCACAGCTCCTCTCAGAGGGCCGTTCAGTACAGAATACCGCCTGCAGAGACTCTGCCAGCTATGTGtccttgtattattatttaaggcTGCACAACtcatttagtttttctatttaaaagaTAGTACTATACTGTACACCTCAAACTGCACTTTGATTGCTTATAAATGCAACTTTGAATTTTGTCATGttactgaaatataaaatgttatataactgtataaataaatgccatG

Function

GO:

id name namespace
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0010467 gene expression biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process

KEGG:

id description
ko03010 Ribosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73073 lncRNA downstream 204090 44115650 ~ 44121067 (-) True G58459
TU73070 lncRNA downstream 214874 44109969 ~ 44110283 (-) True G58457
TU73069 lncRNA downstream 215442 44109336 ~ 44109715 (-) True G58456
TU73065 lncRNA downstream 220447 44097276 ~ 44104710 (-) True G58452
TU73002 lncRNA downstream 347671 43977285 ~ 43977486 (-) True G58395
TU73196 lncRNA upstream 155479 44481052 ~ 44488354 (-) True G58548
TU73197 lncRNA upstream 155479 44481052 ~ 44526239 (-) False G58548
TU73236 lncRNA upstream 217370 44542943 ~ 44543177 (-) True G58585
TU73256 lncRNA upstream 332843 44658416 ~ 44659098 (-) True G58605
TU73263 lncRNA upstream 336308 44661881 ~ 44662333 (-) True G58611
AMCG00009690 mRNA downstream 32039 44284878 ~ 44293118 (-) True AMCG00009690
AMCG00009683 mRNA downstream 61035 44256415 ~ 44264122 (-) True AMCG00009683
AMCG00009678 mRNA downstream 251041 44073850 ~ 44074116 (-) True AMCG00009678
AMCG00009677 mRNA downstream 260690 44051410 ~ 44064467 (-) True AMCG00009677
AMCG00009671 mRNA downstream 318354 43996712 ~ 44006803 (-) True AMCG00009671
AMCG00009692 mRNA upstream 13490 44339063 ~ 44342291 (-) True AMCG00009692
AMCG00009691 mRNA upstream 20897 44346470 ~ 44354753 (-) True AMCG00009691
AMCG00009697 mRNA upstream 176214 44501787 ~ 44512102 (-) True AMCG00009697
AMCG00009704 mRNA upstream 328278 44653851 ~ 44654614 (-) True AMCG00009704
AMCG00009705 mRNA upstream 330471 44656044 ~ 44657724 (-) True AMCG00009705
TU73015 other downstream 329503 43989511 ~ 43995654 (-) True AMCG00009672
TU72928 other downstream 379860 43482421 ~ 43945297 (-) True G58333
TU72548 other downstream 1651450 42669127 ~ 42673707 (-) True G58025
TU71924 other downstream 4167686 40148725 ~ 40157471 (-) False AMCG00009521
TU71520 other downstream 5487593 38835316 ~ 38837564 (-) False AMCG00009472
TU73231 other upstream 182680 44508253 ~ 44512249 (-) False AMCG00009697
TU73235 other upstream 216321 44541894 ~ 44542809 (-) True G58584
TU73240 other upstream 240496 44566069 ~ 44566834 (-) True G58589
TU73318 other upstream 457345 44782918 ~ 44785134 (-) True G58653
TU73631 other upstream 995270 45320843 ~ 45323950 (-) True AMCG00009748

Expression Profile