RNA id: TU73169


Basic Information

Item Value
RNA id TU73169
length 1613
lncRNA type read_through
GC content 0.39
exon number 2
gene id G58527
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 44413272 ~ 44483247 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAAATAGTCAGTTATTGCTGATTCCGTGCAGGCTTTATTTGAGACTGAACCGATTACACATAGTGCCTACAGCTACACAATACACTGATATTCATTGCTCTGAATGGCTGGTTAACAATTGCTAGTTGCTggttaatgaatgaatgcaaaaGCCAGACATTTTAATCCTTTTACTGCATAATACTGGCAGCgctctgaaaaacatttaaagagccccccacccccttgaaGAAATGATGTCCCATAGCCCATTTAAAGCTTGCAGGATCTTTTGAGAAAGGTCAGACGAGCCTTCGTAATCGAATAGCTAGAATACAGCCCTCACGCCCCAGATGTTGCCAGTGAGAAATCTTGTAAGAATTCTTGGCTTGTGGATTCCTGatggatttctctctctctctctctctctctctctctctctctctctctctttggtcatGCAATGCAACTGAAGGTCATCGAGTCACTTTGATTTTTCTCTTCGCCCCCCTAACCCCTCCCTGTCCCccccttttgtatttttacgTCCAGAATGACTGTGtgaattaataaaagaaaactgtcaACTGTCCGTACCAGAGGAAAAAGCCTTTAAACAATGTTAGACTGTTACAGTATTTTGATACACAATAAAGTTGTCttatttttactgttgtcaattaaacttgaaaatgtcgtctgttttgtttctccctGTGATGTTTTCTGAAGACCTTCATTTTTGTGGTTGAGCTCTGATCCAAGGATCGTATTCTGAAAGATTTCAGTGCGTGCCGTTGTCAGCCAATTGCGGTGCTTGGATTTTGAGCAGTTGACCAATGGGAGGCTGGATTGTGGTGACCTTCTCCTTGAATGTGTAAACTTCTACAGCCACCTTTTACACAAATATGTGAACAAATGCTTTAGGGGGACTTAAGTGGTCAAATTGGGTAATTTATCCCCCTTTAAACCCTATATTTGAATAGATTTTCCTGATTATTGGGTAACTGGTCATTCCAAGAAGCTTACAACTCTTAAAgtgataatttaaaaaatgtgagaTCTGATCAGCCTAAATCGGAATTTCTCTACTGCCCCCCATGGGGGGGAAAATTATCTTAATTCCCCTCCTAGTTCACTGGTtcaattttgtttatatttttttcagttttacagttCATTCTGCCCCATCAAAAGTGGTCACAACCCTCGCCAGAAATCCAATCTCTAGCTGCTCAATCCTCAGTCTGGTCCCGCTTTTCACTGTGGAGCACAagcaatgtcatttttcagaGTACCTCACTTTGTCGCAGACTGATGTCCCTGAAATCACTACTGCCTGTCAGCAATGACCTCCTTGTTCTATCCGTTCTGAAGAAAACCGAAACCAAAAAATCTTCcaataaagtttaaaatatatatatatgtcggCTGTACTTGAGTACTGTTGAACTTCTATGATGGTCTTAAGTGTTTGAAAGGAGgactagtttatttttttggttttctttgacTTTCCTAGTTAGACTTATCCATTCTCATTTTATTGATTCCTAACTTGCACATCTGCCAATCTAGCCTTCCAAAATATCGATTGAATTGTGTTCTTTAATAAATTGTATGCTTTACTAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73159 lncRNA upstream 5704 44386497 ~ 44407568 (+) False G58522
TU73158 lncRNA upstream 23190 44386497 ~ 44390082 (+) True G58522
TU73145 lncRNA upstream 53210 44328271 ~ 44360062 (+) True G58513
TU73142 lncRNA upstream 87699 44325151 ~ 44325573 (+) True G58510
TU73083 lncRNA upstream 243483 44169485 ~ 44169789 (+) True G58467
TU73281 lncRNA downstream 276030 44759277 ~ 44760058 (+) False AMCG00009706
TU73337 lncRNA downstream 409598 44892845 ~ 44893078 (+) True G58666
TU73326 lncRNA downstream 434796 44918043 ~ 44921637 (+) True G58660
TU73340 lncRNA downstream 438837 44922084 ~ 44923700 (+) True G58668
TU73472 lncRNA downstream 659928 45143175 ~ 45143472 (+) True G58776
AMCG00009689 mRNA upstream 27100 44382557 ~ 44386172 (+) True AMCG00009689
AMCG00009688 mRNA upstream 32236 44373701 ~ 44381036 (+) True AMCG00009688
AMCG00009685 mRNA upstream 40857 44364531 ~ 44372415 (+) True AMCG00009685
AMCG00009686 mRNA upstream 90475 44314972 ~ 44322797 (+) True AMCG00009686
AMCG00009687 mRNA upstream 99123 44303226 ~ 44314149 (+) True AMCG00009687
AMCG00009695 mRNA downstream 720 44483967 ~ 44490079 (+) True AMCG00009695
AMCG00009699 mRNA downstream 9448 44492695 ~ 44502439 (+) True AMCG00009699
AMCG00009694 mRNA downstream 78530 44561777 ~ 44567900 (+) False AMCG00009694
AMCG00009700 mRNA downstream 115209 44598456 ~ 44603609 (+) True AMCG00009700
AMCG00009703 mRNA downstream 158703 44641950 ~ 44642771 (+) True AMCG00009703
TU73161 other upstream 25308 44386497 ~ 44387964 (+) False G58522
TU72919 other upstream 477510 43932952 ~ 43935762 (+) True G58324
TU72303 other upstream 2335031 42036018 ~ 42078241 (+) True G57830
TU72035 other upstream 3418613 40990802 ~ 40994659 (+) True G57604
TU71881 other upstream 4308324 40102383 ~ 40104948 (+) False AMCG00009516
TU73232 other downstream 84118 44567365 ~ 44570531 (+) True AMCG00009694
TU73244 other downstream 101315 44584562 ~ 44599328 (+) False AMCG00009700
TU73251 other downstream 149503 44632750 ~ 44651967 (+) True G58600
TU73437 other downstream 572818 45056065 ~ 45057874 (+) True G58747
TU73602 other downstream 1024947 45508194 ~ 45509104 (+) False AMCG00009761

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU18423 True 1208 lncRNA 0.34 2 CI01000001 5924884 ~ 5939544 (-)
rainbow trout (Oncorhynchus mykiss) TU18423 True 221 lncRNA 0.54 1 NC_048565.1 16952307 ~ 16952527 (+)
eurasian perch (Perca fluviatilis) TU18423 True 311 lncRNA 0.60 2 NC_053113.1 2514174 ~ 2578148 (-)