RNA id: TU73235


Basic Information

Item Value
RNA id TU73235
length 916
RNA type TUCP
GC content 0.57
exon number 1
gene id G58584
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 44541894 ~ 44542809 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGTCATCGCAGCTCCGGTCGCTCAACACAGATATCAACGCTGATGTCGATACGAAATCAATACCCAAAAGATAAATCAGTCGATACGGGGGGGATCGGCAGGTCGCAGCCGGGGGGGGAAGAGCAGACCAGTTTACAGCTGGTGAGACTGGGAAAGACAAACCGCTTTCGATCTCCTTCAACTCAGCCGAGACTTGAGAGTGTCCCCTTGATTGGGCCTCAGATATGGATGGGGTTTGAACGCGTATCTCATGGGCtcaactccctctctctctctctctctcccttgagTCGACGCGCAAGCAGAATGTGTCCAACAGGTGCCACAGTCTCAGTGCGTCTCTGCAGCCTGTGTATGCCCGCCGTCCTGTGGGTGAGGGGGCGAGGGTTCGTTTAATCGTCCCGCGCGGACCCGACGTTCATATCCTACTCCCGCTCGGCAAGGCGCACCTGGGCCGGTCTCGACCcgcctgcctctctccctccgtcGGTGTTCCGCCGCTGCATCGGGGATCCCCAGATGAAAAGCCTGTGTGAGTCTCTGCTCCTTTCCCTTCTCACTCTCCtcttctttcctttctcttcGGCTGCCTACGTACCCTGTCAGTCCTCTGCCTGGCGGAACATGAACGCACGGGCCACGAGACAGAAATTGCTTTCCCCCCGTCTTGCTTCTAATCTATCGGGCAAGGAGGGGAAGGAGAAGGAACGAGGGATGCGTTCGGAGTCTGCGTTGCCCGGGTCAGTTCCGTGTCCCCCCTCGTCTGCGTCCTCGTCAGGAAATACCAGAGCAGATGCAACTCCTTCAACCTGCGGGCgggacacacacaaacacacacacaacactgcttAATAACGGCACGGCagagattaaataaagacagaatCGTACAGAGCGGTGATTCAATTCCGCAGCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73197 lncRNA downstream 15655 44481052 ~ 44526239 (-) False G58548
TU73196 lncRNA downstream 53540 44481052 ~ 44488354 (-) True G58548
TU73143 lncRNA downstream 216321 44325157 ~ 44325573 (-) True G58511
TU73073 lncRNA downstream 420827 44115650 ~ 44121067 (-) True G58459
TU73070 lncRNA downstream 431611 44109969 ~ 44110283 (-) True G58457
TU73236 lncRNA upstream 134 44542943 ~ 44543177 (-) True G58585
TU73256 lncRNA upstream 115607 44658416 ~ 44659098 (-) True G58605
TU73263 lncRNA upstream 119072 44661881 ~ 44662333 (-) True G58611
TU73264 lncRNA upstream 121929 44664738 ~ 44664945 (-) True G58612
TU73265 lncRNA upstream 122313 44665122 ~ 44665331 (-) True G58613
AMCG00009697 mRNA downstream 29792 44501787 ~ 44512102 (-) True AMCG00009697
AMCG00009691 mRNA downstream 187141 44346470 ~ 44354753 (-) True AMCG00009691
AMCG00009692 mRNA downstream 199603 44339063 ~ 44342291 (-) True AMCG00009692
AMCG00009693 mRNA downstream 213540 44323985 ~ 44328354 (-) True AMCG00009693
AMCG00009690 mRNA downstream 248776 44284878 ~ 44293118 (-) True AMCG00009690
AMCG00009704 mRNA upstream 111042 44653851 ~ 44654614 (-) True AMCG00009704
AMCG00009705 mRNA upstream 113235 44656044 ~ 44657724 (-) True AMCG00009705
AMCG00009710 mRNA upstream 139855 44682664 ~ 44693533 (-) True AMCG00009710
AMCG00009713 mRNA upstream 246321 44789130 ~ 44808487 (-) True AMCG00009713
AMCG00009718 mRNA upstream 379280 44922089 ~ 44927038 (-) True AMCG00009718
TU73231 other downstream 29645 44508253 ~ 44512249 (-) False AMCG00009697
TU73015 other downstream 546240 43989511 ~ 43995654 (-) True AMCG00009672
TU72928 other downstream 596597 43482421 ~ 43945297 (-) True G58333
TU72548 other downstream 1868187 42669127 ~ 42673707 (-) True G58025
TU71924 other downstream 4384423 40148725 ~ 40157471 (-) False AMCG00009521
TU73240 other upstream 23260 44566069 ~ 44566834 (-) True G58589
TU73318 other upstream 240109 44782918 ~ 44785134 (-) True G58653
TU73631 other upstream 778034 45320843 ~ 45323950 (-) True AMCG00009748
TU73632 other upstream 778034 45320843 ~ 45323322 (-) False AMCG00009748

Expression Profile