RNA id: TU73251


Basic Information

Item Value
RNA id TU73251
length 972
RNA type TUCP
GC content 0.63
exon number 7
gene id G58600
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 44632750 ~ 44651967 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GACAGGCGCGTGGTCAAGCTCTCCCTTAAGTCCAAAGAGACAGGCCGCGAGTTCATCAGCACCGATTTCATCTTCTACAACTGTAGCGTCCTCCAGTCgtgtctGTCGTGTGTCAGCAGCCCGTTCAGGTGCAACTGGTGTAAATATCGGCACATCTGCACCAACAACCTGGCGGACTGTTCCTTCCAGGAGGGCCGTGTGAGTGGAGTGGAGggctgtCCCCAGATCCTGCCCACCACAGATATCCTGGTGGCCGCGGGGATGGTGCGGCCGATCACGCTGCGTGCCCGCAACCTACCGCAGCCGCAGTCGGGCCAGAAGAACTACGAGTGCGTCTTCCACATCCAGGGCAAGGTGCAGCGCGTGCCGGCCGTGCGCTTCAACAGCTCCTGCATCCAGTGCCAGAACACCTCGTACTGGTATGAGGGGGACGAGGTGGGGGACCTGCCAGTGGACTTCTCCGTGGTGTGGGACGGGGACTTCTTCATCGACAAACCGGCCACCATGAAAGCCCTGCTGTATAAGTGTGCGGCTCAGAGGGACAGCTGCGGTCTGTGCCTGAAGGCGGAGCCCAGTTTCGAGTGCGGCTGGTGCCTGGCAGACAGGAAGTGCCTCCTCCGGCAGCACTGCCACGCCCCCGAGCACAACTGGATGCACCTGGGCCGCCGCAACGTGCGCTGCAGCCACCCGCGCATCACCAAGATCTGGCCGCTGACGGGACCCAAGGAGGGCGGGACGCGCATCACCATCGCTGGGGAGAACCTGGGCCTGCAGGTGCGCGAGATCACACACGTCCGGGTGGCTGGAGTGCGCTGCAACCCTGCGCCATCGGAGTACATCAGTGCAGAGAAGATCGTGTGCGACATGGAGGAGTCGCTGATGTCCAACCCCCCGGGGGGCGCCGTGGAGCTGTGCATCGGTGACTGCAGCGCCGAGTACCGCACCCAGTCCCAGCAGACGTACTCCTTCGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73169 lncRNA upstream 149503 44413272 ~ 44483247 (+) True G58527
TU73159 lncRNA upstream 225182 44386497 ~ 44407568 (+) False G58522
TU73158 lncRNA upstream 242668 44386497 ~ 44390082 (+) True G58522
TU73145 lncRNA upstream 272688 44328271 ~ 44360062 (+) True G58513
TU73142 lncRNA upstream 307177 44325151 ~ 44325573 (+) True G58510
TU73281 lncRNA downstream 107310 44759277 ~ 44760058 (+) False AMCG00009706
TU73337 lncRNA downstream 240878 44892845 ~ 44893078 (+) True G58666
TU73326 lncRNA downstream 266076 44918043 ~ 44921637 (+) True G58660
TU73340 lncRNA downstream 270117 44922084 ~ 44923700 (+) True G58668
TU73472 lncRNA downstream 491208 45143175 ~ 45143472 (+) True G58776
AMCG00009700 mRNA upstream 29141 44598456 ~ 44603609 (+) True AMCG00009700
AMCG00009694 mRNA upstream 64850 44561777 ~ 44567900 (+) False AMCG00009694
AMCG00009699 mRNA upstream 130311 44492695 ~ 44502439 (+) True AMCG00009699
AMCG00009695 mRNA upstream 142671 44483967 ~ 44490079 (+) True AMCG00009695
AMCG00009696 mRNA upstream 150689 44450103 ~ 44482061 (+) True AMCG00009696
AMCG00009701 mRNA downstream 8847 44660814 ~ 44666978 (+) True AMCG00009701
AMCG00009711 mRNA downstream 57872 44709839 ~ 44712088 (+) True AMCG00009711
AMCG00009708 mRNA downstream 86712 44738679 ~ 44746329 (+) True AMCG00009708
AMCG00009706 mRNA downstream 98209 44750176 ~ 44759812 (+) True AMCG00009706
AMCG00009707 mRNA downstream 112069 44764036 ~ 44768228 (+) True AMCG00009707
TU73244 other upstream 33422 44584562 ~ 44599328 (+) False AMCG00009700
TU73232 other upstream 62219 44567365 ~ 44570531 (+) True AMCG00009694
TU73161 other upstream 244786 44386497 ~ 44387964 (+) False G58522
TU72919 other upstream 696988 43932952 ~ 43935762 (+) True G58324
TU72303 other upstream 2554509 42036018 ~ 42078241 (+) True G57830
TU73437 other downstream 404098 45056065 ~ 45057874 (+) True G58747
TU73602 other downstream 856227 45508194 ~ 45509104 (+) False AMCG00009761
TU73611 other downstream 908010 45559977 ~ 45571635 (+) True AMCG00009759
TU73851 other downstream 1102619 45754586 ~ 45755115 (+) True G59084

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000010_08416488_08564037.mRNA True 3504 mRNA 0.54 17 CI01000010 8416488 ~ 8564037 (+)
eurasian perch (Perca fluviatilis) TU76067 False 669 TUCP 0.63 5 NC_053116.1 39509552 ~ 39534640 (-)