RNA id: TU73318


Basic Information

Item Value
RNA id TU73318
length 2188
RNA type TUCP
GC content 0.58
exon number 2
gene id G58653
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 44782918 ~ 44785134 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aaacAGGCAAGTCACACAGCGGCACAGGATGGGTACCGAACAGCCCGACAAAACAGCACCATCGCCGCGCTTTGCAGCTCCACCACCAGCCTCTACATGACAAAGTAAAAGCAAGGCAAAGCagaggaaatacaaaaatgcacagATACAGCAGCCGACTTGTCATCGCACTTCCGGCCCTTAACAACTCCTGCCTCGATCAGAAAGCGACGCAACGAAAAACAGAGAACGTTCAGCAGTCGAGCGCGAAGCCTGACGATGCCAAGACCCCCAGAGTTGTCCGTTCTACACCAGCCCCGCAAGCGGATCGATGCACACAGCCGGGGTCAAGGGTCACGCACAGGTCTGGAATGGGGGGGTGAATGTCCGGAAGGGTCCGATTCTGCAGAATGTCCCGGCGCTCTGTGGAAACGGCCCTCGCTATAAGTAAGCGGTGATTGGTCACTATGCGTGTTCCCCCTCCGCCGCCGCGCACGGGTCACGACAAACcacggacagagagagggggcatGTCACACGGGGGTTTGCGTGGACAAGGGGGCTCCATACTGGGGCCTGTAAACACTTTGGCGCTGGGACAATTAGGAGCCCAGGAGGAATAAACCCGGTATATTGAGATCAGAGACCAGACGCCCCGGGTTTGAACATTCAACTGAATGGcgccattttacaaaaaaataaatacagcacgCATTCGAACAGAACCAAAAAGACAGCCCCCTCCCCAAGGAAATCTAACAGAAGCCCCCTCTCAACATGctgctcaacacacacacacacacacacacactgcttcaATCCTCCACAGCCCCCACAGTCCCAAATTCTGTCCGCAGTCTCGCCTGTTCGTCTGTCAATGAGCTTCACACCCCCCCTGAAAGAAACCAGATCCCTCACCCACACGTCTCTACTGCGGAGAAGATCCCAGAGagcgccccccacccccctgtgGCCGCCCAGCTGCCGGACCGGCTGTGCGAGGCGACCGCAAGGAGAACAGGTGTGGTCTCCCCGCCGGAAAGTCAACCCAAGTGCAACCGTCTCTCCCGCGCTCTGATCGTTTACCCACTCGGTTCAGGCACAGGATGTGAACAGGACGGGGGCGCGAGGATCATTCGCTGATCTCTGTACAAACGGGACAACACAGACCCACTTTTACCTGCGACCGACCtcacaagcaaacacacacacacaagcactctCACTCGCaggcacacacacgcacaagcaGTCTCTCTcacaagcacacgcacacacacgcactctcttTCACAGGCACACGCACATACAAGCAGTCTCTCTCACAGgcacacgcacactctctctctctctccctctctctctctctctctcgcgctctctgTCACAAGCAAACACACGCAAGCACTCTCTCTCGCAGGCACACGCACTCACaagtacacgcacacacacgcagtctCTCTCACAAGCACACGGACTCGGTctcgcacgcacacgcacgcacgcacgcacacacacacacacacacacacggcagcGAACTGTGAACATGCAATAACAACACTGATAAATGGCCGCCGGCGCCCTCCGCAGCCCGAGGGAGAGAAGCACGACGGACACAACGTGGACACTCAGggctttcaattaaaaaaggagAAGTGCGAAAAACTGagcgtgtgtgggggggtggggggagcacggtcaaagagagagaaacagtgcTCCCGACAGCGAGACGCGGATGTCCCTGTACCGAAACGGCCCAACGGGACAGAGCGGCCGACACCGCGGGGGCTGGTTTGTCAGTCTGGAGTCGAGCCGCGCCGAACCCCAGCCCGGGGTCCCAACACCGATCGCCGTGACCGTCTTTAATTTCAAGTcgctgggaaaaaaaaatgaaaggatgtGCGGGGGCGGCATCTGAAGAATCTCCTGTGGTTTTGCCGGGGGGGTCAGATTCCTCGTTGGCCGCGATTCCTCCTGGAAGGGGGTGACCGAGGGAACAAGAGATGATTAAGCTGGGCGGGTGTTTGCGAGAACCGGGAgtgactgggggggggggggtgtctgcAGTCCGTGGGAAGCCATTACTGTAAAGCGGAGGAAGAACCGGTCACCGCCACCTTGCTGGGAGGGGCTCTCAGTCGTCCTTCTTCTCTCGGGGGCCGTCCTTCTGCGCCTGGAAGGAAACACAGATAACAAGGTGAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73265 lncRNA downstream 117587 44665122 ~ 44665331 (-) True G58613
TU73264 lncRNA downstream 117973 44664738 ~ 44664945 (-) True G58612
TU73263 lncRNA downstream 120585 44661881 ~ 44662333 (-) True G58611
TU73256 lncRNA downstream 123820 44658416 ~ 44659098 (-) True G58605
TU73236 lncRNA downstream 239741 44542943 ~ 44543177 (-) True G58585
TU73319 lncRNA upstream 470 44785604 ~ 44786772 (-) True G58654
TU73386 lncRNA upstream 107658 44892792 ~ 44893083 (-) True G58699
TU73394 lncRNA upstream 131497 44916631 ~ 44916889 (-) True G58707
TU73413 lncRNA upstream 212898 44998032 ~ 45000234 (-) True G58724
TU73456 lncRNA upstream 305083 45090217 ~ 45119224 (-) True G58761
AMCG00009710 mRNA downstream 89385 44682664 ~ 44693533 (-) True AMCG00009710
AMCG00009705 mRNA downstream 125194 44656044 ~ 44657724 (-) True AMCG00009705
AMCG00009704 mRNA downstream 128304 44653851 ~ 44654614 (-) True AMCG00009704
AMCG00009697 mRNA downstream 270816 44501787 ~ 44512102 (-) True AMCG00009697
AMCG00009691 mRNA downstream 428165 44346470 ~ 44354753 (-) True AMCG00009691
AMCG00009713 mRNA upstream 3996 44789130 ~ 44808487 (-) True AMCG00009713
AMCG00009718 mRNA upstream 136955 44922089 ~ 44927038 (-) True AMCG00009718
AMCG00009717 mRNA upstream 184828 44969962 ~ 44976755 (-) True AMCG00009717
AMCG00009723 mRNA upstream 245783 45030917 ~ 45032715 (-) True AMCG00009723
AMCG00009725 mRNA upstream 257712 45042846 ~ 45046433 (-) True AMCG00009725
TU73240 other downstream 216084 44566069 ~ 44566834 (-) True G58589
TU73235 other downstream 240109 44541894 ~ 44542809 (-) True G58584
TU73231 other downstream 270669 44508253 ~ 44512249 (-) False AMCG00009697
TU73015 other downstream 787264 43989511 ~ 43995654 (-) True AMCG00009672
TU72928 other downstream 837621 43482421 ~ 43945297 (-) True G58333
TU73631 other upstream 535709 45320843 ~ 45323950 (-) True AMCG00009748
TU73632 other upstream 535709 45320843 ~ 45323322 (-) False AMCG00009748

Expression Profile