RNA id: TU73326


Basic Information

Item Value
RNA id TU73326
length 2584
lncRNA type inter_gene
GC content 0.50
exon number 2
gene id G58660
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 44918043 ~ 44921637 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCGGGATGGAGCCGAAATGGCGGAAGCGGGGATTTGCACTGTCGCGACCTTCCCCGGCTCGGTCGAATCTCTAGTGGAGAGAGTGAAGCCGGGGTCGGGATGAACCGGGACTCGGGCCGGGGccggtgggggggtgggagaggtCACACTCGAGGTTACTGGTTTATCTCTCGACCGCCAAGGCTACTGCATCTCAGAGGACTCCGTGTGTCTGTCTTCTCCTCTGGACCGATGACCCCCATTCGTTTTTGAATCCACTCGAAGGTGCAATTCGATCACTGCGGACCCCAGGGCTGGCCGAGGGGCGGGGTGCTGGGACGGGCCGCTTCAAACGAAAGAGCGGGGGCGTTTCTTTTGGAGATCATTCCTCAAGTTTTGAGtttcttttgaaatggaaaagacaAGATACTCACAGCCTGATCTGGCCGTGTGTTTTAGCCTTACTTTGTCCgctatacattttttcttatcGGGCACAACTTACAAAGATTCTGATTGCGATCTTCCTTCGGTCCGGTGCTCGTAGACGGGCCGGTTCATTTTAACGTCGCCGGAGACTCTCTGGACGAGCCTGCGGCCGTCCGGACTTTTACcagatgtttaattttgtatttttatgaaatggTCTTATGACAGCTTGAATCCTATTTAATTCTGCTCCGGGTCCTGTGCTGCCGGGGGAGGAGGCGCGGCGCCGCTCTGCCCTCGCGCAGATTTGCAATGCAGCtgtacagtatttttgtattgtgatgACTATTGTTATATCCTCTGTCGTCTGGATCAGATGAGTCGGGGGACCACGGCATTGTGACCATTccatcttctctctcttttttaaatgatggggtggattgttttgtattatgatgatattatctcacacacagacacgcacacatacagtctctctctctctctctctctctctctctctcacacacatacagtctctctctctcacacacacacacacacacacacagtctctctctctttctctcacaagCACAGTAGGCAGTACGGGTAGAGGTTGAATGAGACACTGACTCAATTCGATCCCCTTTTCGATTCCGCTCtagttttatataatgtatagatTTGAATATATTCAGTTTCCTCCTGGttgttttaaccttttattgCGCTGACACGCAGAGTGCGGTGTCTGGGTCACCTGTGTGCCGTGGCGTGAGTGGGAGCCCCCTGCAGTGCATCGTGGGCCGCGCTGGTGGCGGTCTGCGATCCTCCTGCTCCCAGAGTGAGCGCTCGCTGTGCAGAGACACCCCCCCTCTCAGAGTGACTGCAGGCCGGTCCAGGGTCCCGAGGCTCGCTAGACACAGAGTGCACATCATTCTGCAGACAGGGAACGGGGAGACTGCAGATCAGATGGAGcccattatatatttaaattaatttttaaatgagagaaaacTAAGTATTGGCTCCAGCCCCAAGTCAGAAGTGTCTTTGAGTACCAAACCGCTTTACCCAAGACAgaactcatttatatttatatatacatacatacatacatacacagctctggaaaaaagtcaatgttaagtggtctcttcatttttcccagagctgtgtatgtgtatatatatatatatatatatatatgtaagcaGACGCACCTCTTTTGTCATGTAAAGTGTAAATACTGTGTCAATCCACCGAAGCGGGGCGACGGAGATCAGTATCAGGGTAGTGTCCCCGTAAGATACCACCAGTTGTGCAcagtttttaaactttatttaactgtttaaaGCCTGCGTTCATTCAAGGATACAAAATGTCCACAGCAGCGCAACGCTTATCATGGGCAGGGAGAGTAAAACAGCACAACAATAGCGAAATGCGAGTGCTGCTCTGGGGCGCGAGGCATGTTTCCACGATCAGGTGCTGCTCTAGTGCCCGGGACGCGTTGGGGCGGGGGGGTCATCACGGtcacatttttgcatttttctcctCTTATCCTTGTGGAGGGAATGTTACAACATCTCTCGCCAGACTGAGCAGAAACGCCCCCCAGGACCGAGCCGGGGGCCTCGTCACACGCAGGCCGACTGCCGGACGATGAGTGCTCTGCTGGACGGCAATCGTGGTTTTCGATGACATCCgtctcctttttattttcatttccagaaGGCCACTACTTGCCCACCTCTGGCAGTGTACATTTCAGGTGGACAGTGGGGCTGGGGGGTCGATGGATTATTTTATCGCCCTCCTCTGCAGGGAGGGTCGCACTGTCCCTAACAGAGAGACGCAATGAAACCAGCGACGCGGGCATGGGTACGCTCGTACCTGCACACAGCGGCTCTCTACTGTGTATATACACCtacttatgtatgtatattgtattttcatacAGGATTTTGCCAATTTTTAAGGATGTTTAATTGATTGTAGAGGGAAGAGTTATTTTTCTCGCATGCTGTAAAAGACAAGGtttgtaaataaagaaaaactattttaaatgaagcGCTGTTGGTGGTTGGCCTGTTGTTGTGCCTCCTGCGTGTCTGAACCAGTCTGTGACACGCTTGGCCCACAGTGCCACCCTGTGGGCAGAGTGGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73337 lncRNA upstream 24965 44892845 ~ 44893078 (+) True G58666
TU73281 lncRNA upstream 157985 44759277 ~ 44760058 (+) False AMCG00009706
TU73169 lncRNA upstream 434796 44413272 ~ 44483247 (+) True G58527
TU73159 lncRNA upstream 510475 44386497 ~ 44407568 (+) False G58522
TU73158 lncRNA upstream 527961 44386497 ~ 44390082 (+) True G58522
TU73340 lncRNA downstream 447 44922084 ~ 44923700 (+) True G58668
TU73472 lncRNA downstream 221538 45143175 ~ 45143472 (+) True G58776
TU73492 lncRNA downstream 272886 45194523 ~ 45198264 (+) True G58792
TU73541 lncRNA downstream 345302 45266939 ~ 45275033 (+) True G58825
TU73548 lncRNA downstream 354851 45276488 ~ 45277596 (+) True G58830
AMCG00009714 mRNA upstream 1200 44901426 ~ 44916843 (+) True AMCG00009714
AMCG00009712 mRNA upstream 36318 44856527 ~ 44881725 (+) True AMCG00009712
AMCG00009709 mRNA upstream 137075 44768874 ~ 44780968 (+) True AMCG00009709
AMCG00009707 mRNA upstream 149815 44764036 ~ 44768228 (+) True AMCG00009707
AMCG00009706 mRNA upstream 158231 44750176 ~ 44759812 (+) True AMCG00009706
AMCG00009715 mRNA downstream 6230 44927867 ~ 44933814 (+) True AMCG00009715
AMCG00009716 mRNA downstream 29036 44950673 ~ 44962284 (+) True AMCG00009716
AMCG00009719 mRNA downstream 45242 44966879 ~ 44969079 (+) True AMCG00009719
AMCG00009722 mRNA downstream 54023 44975660 ~ 44984837 (+) True AMCG00009722
AMCG00009720 mRNA downstream 67636 44989273 ~ 44998008 (+) True AMCG00009720
TU73251 other upstream 266076 44632750 ~ 44651967 (+) True G58600
TU73244 other upstream 318715 44584562 ~ 44599328 (+) False AMCG00009700
TU73232 other upstream 347512 44567365 ~ 44570531 (+) True AMCG00009694
TU73161 other upstream 530079 44386497 ~ 44387964 (+) False G58522
TU72919 other upstream 982281 43932952 ~ 43935762 (+) True G58324
TU73437 other downstream 134428 45056065 ~ 45057874 (+) True G58747
TU73602 other downstream 586557 45508194 ~ 45509104 (+) False AMCG00009761
TU73611 other downstream 638340 45559977 ~ 45571635 (+) True AMCG00009759
TU73851 other downstream 832949 45754586 ~ 45755115 (+) True G59084

Expression Profile