RNA id: TU73340


Basic Information

Item Value
RNA id TU73340
length 1478
lncRNA type inter_gene
GC content 0.51
exon number 2
gene id G58668
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 44922084 ~ 44923700 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGCTCAATAAATAGACTTTATTCATCACAAAATCTCTTCTCCAGGCAGGCACACAACCCCCAACCTGCTGGACTCACACTCCCGGCCCACCCCCTTCTAATCAGTATCATCATCGGGACTGAACAGGCAGagaatacacaaataaaccGGCTTGCCCCCGCCACTCTCTGTGCAAAGACCCCTTCAACAAACCTGTCGTTCCCCAACCCCAGTCCAGATCCTTTTACACAGTCTAGGCCGTAACATTTGCAAGGGAGACACTGGGCCCAACAGAGTTTTTCACAGTCAGGCTCTTCAGTGTAAATGTACACACTTACTAATATTACttggttttagaaaaaaaatggagtgggggggggtttGGGAGACACTTCGGCTGTACATTTACACATGCATGTCACATGTAACGTGGGCTCATTTCAGCCCATGAGCAAAACCTGCGGGAGGCACTGAAATAATTATTGGAAACAAACTGGAGAGAGCGTGGATTCACACCAAAACAGCACAGTTACCATCAaatagagagagtgtgtggggggaggtTAGATTTTAGGAGAAAGGGTAGAAGAAAGAGACTATGGGCCTGGGGTGTCacttaatattatataaaacatgctTCAATCAAAGGCAGATGGTgtagagcaggggttttcaaaccgttcctggagtaccccctggtgtAGAGAAGGTGTGTGACGCTTCAGCCTGTGAGACGGGACGGAGtggaagggtgggggggcaacGAAGGCAACAGTGTGTTGAGAGAGATCACATCTggacatttgcattaaaaacattaaaagacacTGACAGATCCTCGTACTGGGGGTTTCATCACTTCCTCCGATCCTAACTGTCAACGAGTGACGTCACCAAACGTgagcacaacccccccccccaacaaccACACAAACCTGCTAAAAAAGACTGGAGATACAGAGAAGTGGGGAGAGAGAGCTGCCATCgagaaccccctccccccagccaGAGCTGCAGTGACACGTTGAAGGCTGTTGCGGGGGGGCTGTCTGGTTCTCCACTCAGAACATGGCTGTCTTGACCTCCCGGCTGAAGAAGCCCCCAAAATTGAGGTCTCGGGAGATGAGCTCCTCCTCCACGTTCTGCAGGGCCCACTGGTGCTCCACGATCTCCAGGGCCTCCCACTCGCTCTGCGGAGACACAGCCACGGAGTCAGGACCCCCCAGAACCGACCCACAGAGCCAGAACCCCCCCAATGCcaagaggagagcaaccagacttattccaggtctgaagggaatgtcctactgagagactgaggaactgaaccttttcaccctggaacagaggagactacgtggggacttgatccaagtcttcaaaatcatgaaaggcatcgaccacatcaaaccagaggagcttttccagatcagcagggacacacgcacccggggacacaaatggaaattgggcttcaagacattcgagacagaaaacag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73326 lncRNA upstream 447 44918043 ~ 44921637 (+) True G58660
TU73337 lncRNA upstream 29006 44892845 ~ 44893078 (+) True G58666
TU73281 lncRNA upstream 162026 44759277 ~ 44760058 (+) False AMCG00009706
TU73169 lncRNA upstream 438837 44413272 ~ 44483247 (+) True G58527
TU73159 lncRNA upstream 514516 44386497 ~ 44407568 (+) False G58522
TU73472 lncRNA downstream 219475 45143175 ~ 45143472 (+) True G58776
TU73492 lncRNA downstream 270823 45194523 ~ 45198264 (+) True G58792
TU73541 lncRNA downstream 343239 45266939 ~ 45275033 (+) True G58825
TU73548 lncRNA downstream 352788 45276488 ~ 45277596 (+) True G58830
TU73535 lncRNA downstream 406084 45329784 ~ 45332856 (+) True G58822
AMCG00009714 mRNA upstream 5241 44901426 ~ 44916843 (+) True AMCG00009714
AMCG00009712 mRNA upstream 40359 44856527 ~ 44881725 (+) True AMCG00009712
AMCG00009709 mRNA upstream 141116 44768874 ~ 44780968 (+) True AMCG00009709
AMCG00009707 mRNA upstream 153856 44764036 ~ 44768228 (+) True AMCG00009707
AMCG00009706 mRNA upstream 162272 44750176 ~ 44759812 (+) True AMCG00009706
AMCG00009715 mRNA downstream 4167 44927867 ~ 44933814 (+) True AMCG00009715
AMCG00009716 mRNA downstream 26973 44950673 ~ 44962284 (+) True AMCG00009716
AMCG00009719 mRNA downstream 43179 44966879 ~ 44969079 (+) True AMCG00009719
AMCG00009722 mRNA downstream 51960 44975660 ~ 44984837 (+) True AMCG00009722
AMCG00009720 mRNA downstream 65573 44989273 ~ 44998008 (+) True AMCG00009720
TU73251 other upstream 270117 44632750 ~ 44651967 (+) True G58600
TU73244 other upstream 322756 44584562 ~ 44599328 (+) False AMCG00009700
TU73232 other upstream 351553 44567365 ~ 44570531 (+) True AMCG00009694
TU73161 other upstream 534120 44386497 ~ 44387964 (+) False G58522
TU72919 other upstream 986322 43932952 ~ 43935762 (+) True G58324
TU73437 other downstream 132365 45056065 ~ 45057874 (+) True G58747
TU73602 other downstream 584494 45508194 ~ 45509104 (+) False AMCG00009761
TU73611 other downstream 636277 45559977 ~ 45571635 (+) True AMCG00009759
TU73851 other downstream 830886 45754586 ~ 45755115 (+) True G59084

Expression Profile