RNA id: TU73456


Basic Information

Item Value
RNA id TU73456
length 1187
lncRNA type sense_over
GC content 0.55
exon number 2
gene id G58761
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 45090217 ~ 45119224 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GACGAAGCCAAACATGGAAAAAGACACCGACACAAAGGCAGGGATGCACTTTGCAgcataaaatactttaattctttaaaaacattttttttatccacaattataaataaactcTGTTGAAAAACTACTACAAATTCCCCTGGTATCGTGGCTCTTTTTTAGGTGGACAACAAAAAGCCAACAAACCCGCCCACATACACATATGTCAGCCAATCAGAACACAGTCTCCGCAGTGGGCGGTGTAGAGACCAGTGTGATTGGACCTAGGGGGGGACAGAGTCCAGGTGGACCCCTGCTCTCAGTCTGGGACTAAAGTGCTAATGGGACAGTGGGGGTCTCCAGTGTACCAACGGGACAGTCAGAGTCTCCACAGCATCCTAGTGGGACAGTGGGGGTCTCCACTCCACAGTCTGCCCCCCCCGGCCCCTTAGCTGAAGTGCGGACAGCGCGCTGGTGCTGGGACATCCCTGCGTGGGGGGGCAGCAGTCCCGTGTTGTCGTGTCTTTCGTTACGACCACAGCAGTCGATCCCCATTTACATGTGTGCATCAGTGCAGGTTTATTTACgttttagtgtattttatttttcttgtacatTAATTGACCCTGCAGCCGATTCGCTTGATTGACTGGCTGTGGACCCCCGACCCAGACCAACCCCACACTGAcggagcagagagagggagagagagggggaggggtggtgaAATAAGTCCGAGAGGTTCGGCCGGGACTCGGTACCAAAGACACCGCCCCCCCAATGCCCCCAGCTGTGTTTGATGGAGTGTCACACTTAGGAAGgaggagttgggggggggggtaaactGCTGCTACGTAGAAATTCCTGCAGATACGAAATTACATCTTCCTCTGCACAGTCCTGGGTCTGGGGTCCGCTCGGCCCAGGAGCGCTGGTGCATTACAGCGCCGGtccacagatgtgtgtgtgtggggggggtcgATGGGGTGCTACTCCGACTGGGCCGAGTCCAAACACACGGTGCTGGATGCTGTCTCTGGACCGCACTGGTGTCATGTGTGCCGGGGTCGTACAGCGGGTCTCAGACCAGCAggaatgtctgtctgtctgtgtgtgtgtgtgtctctctctctctcgggggGGTGAGTCTAAGGGGGTCACAGTGAGAGCAGGTGGTGTCCGAGTCCGGTGCTACTGAGACCCCCTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73413 lncRNA downstream 89983 44998032 ~ 45000234 (-) True G58724
TU73394 lncRNA downstream 173328 44916631 ~ 44916889 (-) True G58707
TU73386 lncRNA downstream 197134 44892792 ~ 44893083 (-) True G58699
TU73319 lncRNA downstream 303445 44785604 ~ 44786772 (-) True G58654
TU73265 lncRNA downstream 424886 44665122 ~ 44665331 (-) True G58613
TU73509 lncRNA upstream 49717 45168941 ~ 45230457 (-) False AMCG00009739
TU73521 lncRNA upstream 65137 45184361 ~ 45250020 (-) True G58808
TU73514 lncRNA upstream 100405 45219629 ~ 45241933 (-) True G58807
TU73621 lncRNA upstream 133160 45252384 ~ 45277597 (-) False AMCG00009742
TU73634 lncRNA upstream 212991 45332215 ~ 45336884 (-) True G58901
AMCG00009724 mRNA downstream 2730 45057674 ~ 45087487 (-) True AMCG00009724
AMCG00009725 mRNA downstream 43784 45042846 ~ 45046433 (-) True AMCG00009725
AMCG00009723 mRNA downstream 57502 45030917 ~ 45032715 (-) True AMCG00009723
AMCG00009717 mRNA downstream 113462 44969962 ~ 44976755 (-) True AMCG00009717
AMCG00009718 mRNA downstream 163179 44922089 ~ 44927038 (-) True AMCG00009718
AMCG00009733 mRNA upstream 1087 45120311 ~ 45124004 (-) True AMCG00009733
AMCG00009739 mRNA upstream 104865 45224089 ~ 45230405 (-) True AMCG00009739
AMCG00009740 mRNA upstream 126488 45245712 ~ 45246944 (-) True AMCG00009740
AMCG00009742 mRNA upstream 132413 45251637 ~ 45261295 (-) True AMCG00009742
AMCG00009741 mRNA upstream 148179 45267403 ~ 45269612 (-) True AMCG00009741
TU73318 other downstream 305083 44782918 ~ 44785134 (-) True G58653
TU73240 other downstream 523383 44566069 ~ 44566834 (-) True G58589
TU73235 other downstream 547408 44541894 ~ 44542809 (-) True G58584
TU73231 other downstream 577968 44508253 ~ 44512249 (-) False AMCG00009697
TU73015 other downstream 1094563 43989511 ~ 43995654 (-) True AMCG00009672
TU73631 other upstream 201619 45320843 ~ 45323950 (-) True AMCG00009748
TU73632 other upstream 201619 45320843 ~ 45323322 (-) False AMCG00009748

Expression Profile