RNA id: TU73534


Basic Information

Item Value
RNA id TU73534
length 7245
lncRNA type read_through
GC content 0.51
exon number 4
gene id G58821
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 45339605 ~ 45398453 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGCTCACAGAGGAGTTTTCCTCTCGTGTTCAAAAGGCAAACATAACGCACTGAACAGTGGAAGAAAGAGTCGGGTTTTATCccccattttattatttctttctttttgcttctatttattgtttaaaagcatgaatgaataaatgacaaATCAAGTATTCCTACACAATGCAGTCGGGTAACTGCCAGGTTCTCAATATCGTGAAAGGCAAGGCTCTGGCCGGGGTCAGTGACCTCTGAGCTCTGGGTTGGGGATTGTTTTacagtctgtctgtgttttattatttttattattactactgttgTTTGTTTAGGTTTAtctttgtttagattttttgcaAAAAGAAGTTGGACTACCCATCCCTTCATTtatcacatgaaaataaaaataattcatataaaaacttaaaaagacGGCAACTTCTGGAAGAAGAAGGAACGAGATGAAGGGAAGTGGGCGTCCAACCAGGCCACGCGTCTCATAAAGTGCAGATTGTCCTCTATTACTGGAATCTTTTCTCAGAACTGGCCAAGGCTGAAACATTCAGTTATTTCAAAAGGTGTCAAGATTGTTTGAAAGGCAAAAGTGGGCCAACGGTCGCAGCAGGCAGGACTGGGGGCAGGAGCAGACAAGGACAGCACCGAGCAGCAGCCTCAGGGCAGTAGACCCTGGGCTCAGAGAAGAAGCCCAAACGGAGCAGTTCAGTCAGGCTGGATCATGCAGCCGGCCACTCTCTCACCAGACTCCAGACAACACTATTATACACTGAGCTGTACGGCACTGTGCAGGAGATATGAGATAAAAACAGCTACTGCAGTTCATCAGATATACTTGTGACTTCGAAGCCAGAGCAGATAAGGTCAATACGCCGCGCGGAGAGCCATCTCTCACTTCACTCGGCCCGGTCTCTGCGGATCCAAACAAGGCAGAAACAGCATTTAACTAACTCTCACATCCTAAACCAGTCCAGCTGCAGGACCGAGTCCAGCTGGTCAACACCACTTCACAATGAATGGGGGCAACACCAGGACCGCGACTCTACCGGTGTTTCCTgacttaaaagcaaaacaagccCACTGTGCACGCATTATGGTGAGACGTTATATTCATTACAATCTCTACTCTACCCTCCTGTCCTGTGCTTTGGTCTTTCACACAGTCCGAGTCTGGCGACGATGGAGGAAAGGTTTGTATCGTTGGGACCAAACCCCAGGAGTTCTCAAAGCCCGGCCTCGGAGTAGACAAACGCTTAATTTAGCCTGAATATCGTCCTGTTCCTTtttatctctccctccctctctccctctctctctccattaaaaacacagagagaactGCTGGCTGTTCTTTTTGTTTCCTCCTGCTGGCAGACGCAGTGGAAGATCTTACCTCATGATTTAAACACTTGTCATGTCACAGAGGCTTTTGCTGGCTGGACCTGCATTAGAGCAATCAGCGCACACACAGGCGCACATGCATCTATCCACAGTGTACAGTCCTCTCCACTGTATCTATGCATCGACAGCCCCTCTCTGCCCTGACCGTCCCACGTGCTGCAGACGGGGATGCGGGTGACTCTCTGCTCGGAGTGGCCGGAGTGCAGCGCTCCTTCCCTGTCGGCCCACGCCGGAACAAAAGGCCAGTGTGAGTGCCTGGCAGAAAGGCTGACCCTGGGGGAATCGGCCTCGGCCTCTGCCTCAGGTTGAGCTGGCGCAGGGACAGaggagacatttatttatttaatttcctggcTACAAACACACTCCCACACCGCTGGACAGAAACGCATTCACACACTTCTCTCCCAGCATGGCTCGCCGTTACCAGCGCACCTGGTGCCGCCCCGGGGAGCCCGCCGGCTGCACTGGGAAACTTGGCACACACTGCCCGCGCCAACGGCACGCTTAACAACGGGTTCCAGTGACTGGCGGCTGGGGGGGACGAGGACGCAATGACAACATCCACGAGGAAATACAGCCCCAGTACTTTGCCTTTAAAGCCTCCATCTgtttacacataaataaatatctattgaCGTAGATAAGGCGGTGGTAGACTTTGCACCACTCCGCCACAGCACAGCACGGACGCGCCAAAGCCCAGCAGCCAGCCCTAGGCCCTGTGTTCAGAGCCAACACAATTACACAACCGCCGCACCGACCGATGCAACTACAGGGGCTTTATTTGGGCCTCAGGAATACGCATCAGGCCCGGGTCCCCCGACTGCTTGGCCAGAGACCCCATTAGCCCACCTTTGCCTTTTCTTTGATCTTTCTGTTGTTGGAAAGTGTGTTCATGTCAAAGGCCACTCCCCCCAGTCCATCTCCAGCTCAAGGCACTATCCCTTCTGCCATAGCTGGGCCGTCTACAGTCAACGCACGCAGCTCTGGACCACGGAGACGTGTTCGATTTCATGCCAGGAGGTTCTagtataatacacacacacacacactgactatatatataaatataaatatatatagtcaaacaaacacaagtgaTTGCTGTCATCTGCTCTGCAAGGACACCGTTCGAGAAACACATGCCGTCACcaattgctctctctcttttaatttgtattaattgtgtaACTAATTAAATCCCCAATCAGCCAGGGCCCACTGCCACCCCGCTGGTCGCTGGCGCTCTTTCCTCCTCGGGCTGCACCCCCATACGTTTTGTTCCAGAGGGGACGCCGGCTCCCTGACCACCCTGCGGGGGGGCCCGGCCTCCGGGTGAGTGGGTGCCCGTCTCCAGCGGTGCGACCCAGTGGTCTCAGAGGAGCCTCTGGACCCGGCAGACAATAACACAAGACcaatcacacaaaatacaaacacaaaaacacaagcgACAGCCTCCAGCCCAGAAGCCTTGCTGCCACTCCTGCACACTGACGTGGGGGAAGGCGTATTGTGGTTTTGTCTCCGTTTCCTCTGCGTTTGGTCTCGGTTTGGATTATTACGTAGCCCTTGATTCGAGCACAGTGAATCAGATGCTCGTTTTTCCGAAAGAGGCCCCTGTCCCCCCCTGTGTCGGGGGTCCGGGGGAAAGGGGAACAGACCAAGGAGGAAAGAAAGGGGTCACGGCCCGAACTTCATAGGGcgctgtgtgtgggggtggtgCCAGTGAACCTCGTGCCGGGAGACACCCTGATCGCCAGCGAGCTGCTGTTCTTACACTCCCGCTCCTGAGCCCCCACAACAGAGGAGCTCTGCGTAGACTACAATACGAGACACGATTGTCTCTGTCCGGCTTGCGTGCTTGCAGTGTGTCAGGTTGTGTCTCTGTCTGGTCTGCGTGTTTGCAGTATGTGTCAGgttgtctctctgtgcgtcGGCCTATTCTCTGAATCCGGTCCTTGAGAGCCAGGCGCAAGTGTGAGGTCCTGATCATGGACACTGGGAACTCAGCCCCTAATTTAACCTTTCAgctgtaaaaaaattaataataatcctaactgAGAAATTACATGAATGTAGTCTTTGCGTGATTACCCCAAAGATGGCATGGTTATAAAACTGTTCAGTTTAATAAATTCCTCATCTGTTCTTCTCTGAAGCCGTTCTACTGTCCTggggcaagagagagagagagagcgagtgagtTTGTGTAGAAACAACACTAGGGACTAGAGCGGCTACACACAGAGATCCCCCTCTCTGGACTGGAGAAGTGGGTTTCACACACGGGACTGCACGGCTACACGGTTTGTCTACGCGGGTTTGGAATCGTGACTCGGAAATCGTACCAATTTCCCTACTGAGCCAAGTTCACAATCGACGTGTTCACAGACTTTGCGACGACTCGTTTTGAGAGCATGCAAACAGCGCTGCGATACGGGCCGGCCTCTCGTCCGGGTGGGAACTGTAAACCTGCAGTGCGACGGCCAGCGGACGGGCAGCCTGCGTGCGGAGAGCAGGAGAGGGCCCCATCGTATCGCTATGGTTATGGTTATTAGGATTAGTATTACGTTTAGTATAGATACACATActtgtcgtgtgtgtgtgtgtgtgtgtgtgtgtggtttctgttACAGATAAGGTGCTTCGTCATCTGAATaagtggataaaaaaaataaaaaacaacaactttgtaaacacaaatacattggGAAGTAttctttttgtaaatgaaaaaactaaaacaaaacaaaccaataagaGCTTCCCACAGCGGCCTGCTGGAGTGCCACCCGAATCCTGGGTTTTGGTTAAAGGGCTTTTATAAGTCAAATAACCTGAGCTTCAGGTGAAACACTGCAGCTCCACAGTGCAGTCTTTAATCGTGATGAAATCTCACACAAGAGagaagtacacacacacacacacagacacgcagacacacacagacacgcagacacacacagaccccgACACATCGCTGGGGGCTCCTGTCATTTCTCACTCCCCATTAACATCCTGAATATTACGATCTTAATTATTCTTCAATAGTAAAAGGCTGAAATCcatctccctcctccctctgctTTCATTAAGAtctgatttataaaaaatatacatcttgATAAtaactaagaaataaaaaataaactacagctAATACTTGTactgctcttttattttttttattgctcaCAGCCCTCAACATGTAACACGATACTAATGTTGTCAGAGGCACTAGGGAAGCCAACGATAACGAGGATaacgaggcaggagaggagaggaccGTGGGAGCTCAGTGAGGGTCAGCGCAACCTTCTGCTCTTAACAATCGTCTCAGGATGTTAATCAGAgggaatattatatattatacacacacacacacacacaaataaatactgctGTGCTACTTCAGCTGTAAACATGGGGAGAGGTATGGCACTATTCACGCCCAGAGCCCCTCTGTGTAAAAACACACGGTGATAAGAGGTGTAAACTGAGCGATGGCCTCAGTATTCGCTCTGTGCCTCGCAGGGGACGCCAATAGTGTGCCGTCTGCGGTGAGGACACACGAGTtcccgaaaaaaaaaaaaaaacaccccaaatTCTCCCATCTAACCAGGGTTGGCGTGCATGTGTGTACagagagtgcatgtgtgtGTGTGTGTAcagtcacagtgtgtgtgtgtgtgtgttcagtcagAGAGTGCGTGTGCAGTCAGAGCTATAGTATGCATTGTTAGTGCCAAAATGGAAGCTCTTAAAGGTCTCATGTTTTCAGTCGGAGAAGCCCGCTTTGGACACGGGCACTGCTGGCATGACCGTTGGGAAGCTCTTACCACACTGGGGTTCACAGACACAaagtaaagaaacaaactgGAAAAGCACGGCTCTCTTCGAAGCTTCACAGGACTGAGGGAAGAAGACGTCGTAGTCTTTGGCAGACTGGAGGCTGTGGCGCCCTCGACACGCTGCTGGACTGAACACACGCAGAAAGGTCTCTGTCCTGCATGTCAGGGGGGCGTGTGTACAAAATACTCATAACAATGACAACTCTACTGTCAGAGAGAGCGAGCGCCtgctcgtctctctctctctctcattgtttACTTCTAACTGACAACTACTGATACTTCCtagttttacattatttcatagtattatcattattatttaaaaaaaatgtgaactACTAGAAGCTTGTTTAAGAGATGAGAGTACACTGTGTGTGTAATGGACAGTCAGcctcacagaaaacagagaaatcAACAATCACCACCCGTCAGAACCCGGCCCTGGCTGCGCTGGGAAGGGGACATACTTTCCTCTCGCTTTAGTTTTGGGGCGGAGGAGACATGGCACACTGGAGCCGTCTCTGGGAACCGTGTCAGGCTTTTAAAAGGGTCAAGATGCTGCCCCAGCTGCGACATGGCCAAGGGGCTGCCCGGCACAGCTCGGACACCAAGGACGGGGGTGCCATCTCTCACACAGCGCCTCNNNNNNNNNNGCGCTCGCCAGTGAAGCTTCGAAGAGGGAACCGCTGGGCAGGTGAAATGCACGACGCAAAACGGAACGGTTATTTAATCAGGAAGCGATCTGCTATTgagtttgtttgtctttctttcttcgGTTGTCGTTCTTGGTTCAACAGCCCGACCCACACAGAGTACAACACACAACAGCTGCCGTTTGtatggtaatatatatatatatatatatatcgatcagatttttttgtaatttttttCCCCCCCCACGCTCCTGCCTGAGGGGTTGAATGCGCGGGTCTGCAGCCCCCGGGAGGAGCTCGAGCCAGTGGCCATGGAGGGGGGGGGTCTGTACCTCATTAGAAGATTGACTGATTGGCGGTAATTGAGGTTAATTACAAAAAGATATCGCAACCAAACCAATCACTGACACACCCAGAGAAGGAGAAGAGtacaggaggaagaggagtaggAGAGGTCCAGTTGGCAGAGGAAGGGGAAGAACAAGATGGAAGGAGGAGGGAAAGGAAACATGAAGACggacaggaggaggagagaggggaggataGGCGATCCTGCGCACCGGCCCTCTTCTGCTGCTTCCGCCTCCTCTTGCCGGCGGCCCGCAGCGCCTGGCCCTGCTGCAGGGGCTCCACCTCCAGGATGTGGGACAGGGCGAGCGGCCGGGCCCTCCCTCCCGCGCCCGGCTGCACCGCGGCCCCCCCCACCTTCACGCCGGCCTCCTTGAACTGCACCGTCATCGGCCCGAACTGGGGGATAGAGACAGTCAGACGCATGTCCCAGCCCCGGCCCTGGACCCCCAGCTCAGCGTCTGCCGGCGGCCTCTCACCTCCGTGTCTCGGTCGTCCTCCATGGTCTCCTCCCGctcttccttctcctcttcctcctcagcgCCCTCCTGCGCCAAGCTGTCCATGTCCTGCTCCGGCGGGACCTGACCTCCCGGGGTCATGCCCGAGGTGAGCATGCAGAAGCCTGTCCCTGCACCCGGGTCACTGACCTGCACAGCTGCGTGACACAAGCGTGGCACTcgtatacacacatacatgcatgcgtgtgagtgtgttagtatgtatgtctgtctgtgtgtgtcctgtgtcagactgtctgtctgtgtgtgtcccgtgtctgtctgtgtgtgctccatgtgtctgtttgtgttccGTGtttgtctgtccgtctgtgtgaCACACAGCCCCACCTGCCAGCGCATCCTGGTTGcccttctccagctcctcccaGTTGAAAGCTCGGCCCATCTCCTCCACGATCTGTGCGCTGACGTGCGTGGGCAGGGTGTGCGTCTCGGGGGGGTGCGTGAAGTAACTGATCCTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73535 lncRNA upstream 6749 45329784 ~ 45332856 (+) True G58822
TU73548 lncRNA upstream 62009 45276488 ~ 45277596 (+) True G58830
TU73541 lncRNA upstream 64572 45266939 ~ 45275033 (+) True G58825
TU73492 lncRNA upstream 141341 45194523 ~ 45198264 (+) True G58792
TU73472 lncRNA upstream 196133 45143175 ~ 45143472 (+) True G58776
TU73604 lncRNA downstream 114183 45512636 ~ 45513047 (+) True G58876
TU73708 lncRNA downstream 174817 45573270 ~ 45575964 (+) True AMCG00009760
TU73715 lncRNA downstream 184066 45582519 ~ 45584669 (+) False AMCG00009758
TU73710 lncRNA downstream 186305 45584758 ~ 45585330 (+) True G58971
TU73711 lncRNA downstream 186371 45584824 ~ 45585330 (+) False G58971
AMCG00009749 mRNA upstream 27213 45309557 ~ 45312392 (+) True AMCG00009749
AMCG00009736 mRNA upstream 85424 45251935 ~ 45254181 (+) True AMCG00009736
AMCG00009734 mRNA upstream 97701 45236167 ~ 45241904 (+) True AMCG00009734
AMCG00009735 mRNA upstream 118918 45212567 ~ 45220687 (+) True AMCG00009735
AMCG00009737 mRNA upstream 151493 45187220 ~ 45188112 (+) True AMCG00009737
AMCG00009751 mRNA downstream 24074 45422527 ~ 45435865 (+) True AMCG00009751
AMCG00009752 mRNA downstream 39516 45437969 ~ 45453979 (+) True AMCG00009752
AMCG00009750 mRNA downstream 68206 45466659 ~ 45476997 (+) True AMCG00009750
AMCG00009761 mRNA downstream 109314 45507767 ~ 45511037 (+) True AMCG00009761
AMCG00009757 mRNA downstream 122900 45521353 ~ 45531436 (+) True AMCG00009757
TU73437 other upstream 281731 45056065 ~ 45057874 (+) True G58747
TU73251 other upstream 687638 44632750 ~ 44651967 (+) True G58600
TU73244 other upstream 740277 44584562 ~ 44599328 (+) False AMCG00009700
TU73232 other upstream 769074 44567365 ~ 44570531 (+) True AMCG00009694
TU73161 other upstream 951641 44386497 ~ 44387964 (+) False G58522
TU73602 other downstream 109741 45508194 ~ 45509104 (+) False AMCG00009761
TU73611 other downstream 161524 45559977 ~ 45571635 (+) True AMCG00009759
TU73851 other downstream 356133 45754586 ~ 45755115 (+) True G59084

Expression Profile