RNA id: TU73535


Basic Information

Item Value
RNA id TU73535
length 3073
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G58822
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 45329784 ~ 45332856 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cCTTCCTTTATTCCACTAAACATATCATTGAGAAACACAGCAGAGAACATAAATtcagggctgagagagagagagagagagagagacacagagagagaatgggaTGGTACAGAACTTAGCATTCACTTAATAACAGTCCTTGGTTATTTGGTCTTCAATATAAATTGTCACTACGGTAGGATCTGTAAGCAAAAATCGTGTTTTCAGCTAGTTCATAATTCACACTTATAACCAGCCTGACTGACGGAAGCAGAGGAGAAGTGAGAACACCCAAGACAAGGAGGTTACGCactgaatttatatatatatatatggagcaTTATGTCTTCTATCCAGTTCCAATAGGTTTGTGTCAAGAGGGACGGgtgatttaaaaatcaatccaTTTCACACTACACTGCGCTGAGTTGAACTAGGTGTTTAGGGAAGTACAGGGAATTCCCCGGGTGAAAACAAAacttaagaagaagaaaagtagGAACTGTTTTTCATAAGAGTGATTCAACACTAATGCAGTTCCCCAGTAAACAGAGGGTTCCAGTGGAAAGCGTCTCTATTGGACGATCACTCCCCACACAGTGAATCAGCCTCGGGGGAAATTACTGATTAGAAACACACGGGGATGATTGTTCTGGTAGCTGTGGCATTGTGAGTGGCATCAGCAGTGGTGGTGTGTCAGACAGTCGCCACAGCGGGGGGCAGGCCGCAGACATGCGACACATCTGTCCAGAGACGCACAGCTGGAAATCAGAGTGGTGAGGAGACACACGGGGCGGGGGCGAACGGGACGGATCGTACCCCCTTGTCATGGGCCCACTGAGACTTCGCCAGACGCACATACAGAAGCCCGGGGGCGGCTGCCGGTACAGGCTGAACAGGCATGTGAGACCCCTGGCCCACCCGACAGGGAACAGCCCTCCGCGCTCGTCTGGTGAAGCCCCACATGCACAGGGAACTATGTGCTATTGCTGCAGCCAAGTTTCTGTTGTTTACCACACAGATGGATGGAAAGGTGACAAAAGCAAGAGATCCCATcgctatatatgtatatatatatatttaattagattaatatatattatcatgtacaaaaagaaaatattacatatatagtatagaaatatatatgtatatatatctgtgtaaatatatatatacatatatatctgtgtatacaatatatatacatatatacgaTGTAAGAGAATTGACAGCTCTAACTAGTCAGTGATTGGAAAAACAGCTCTTTTTGTAGAAAGGAACCACATGATTCAGTACAGAGgttattgtatatgtatatattttcatcttttttgTAAGTAACCAGGAAAATTAAGTTGACTGacttcacagaaaaaataaacactgttgATAACCTACTGCTAATCCCTAAACCCCCGGTTTCACACCTCTGAAAGCACTTAGTGGACAATAATGAAACAAGGGTGGGAAGGACATGACAAGGCAAAACCTCATGTCAATCGCAGGTAACCCCATGCTTACAGACGCACACGCACTCATACGTCACATAGTCAAAGAACAATGGAGAACAACAGCTGGAAGAAGgatgtggtttaaaataaaatataaattccaCCACGAACCCCACATTGAAGATGACTGGAAAACAAGGTCACAAATTTAACGAAACAGAAGAgatttgatcaaataaaataacccCAAATCACATGACTCCATGCCCActcctccctctgtccctcccaGCCGTGACACTTTAGCAGAGGTCTAGACCCCCCAGCAGGAGCAGGCCATCTGGCTGTTACACAAGCTGAGCCAATTAGGAGAGACTGGCCGCGGCGCTGCTGCCCATCTGGCTCGAACAGGGCGACCCTGAGCTGCCCAGCCGGGCTTGTTGCTCTTGCGCAACTCCAGCTCCACTCCCGCACAACATCTCCAGAAAACTCAGACCCCAGAGGCTGCAGCCACACTGACCCCTCACTCATCCATCCAGAACCAAAGTTCCTCGTTCAGTGCTTGGTGGGCTCCTATTAGTGTAGACATGAGATGGCTCTGGCCAATAGGAAACTGGCATTGAGGGCCAGGTGGGCATTGTCAGGGGGCTGCCACTCTTGTGCCAGTGGGAGGTGGGACCGAGGCTGGGGCTCTGCCCAGGCGGAGACAGAGGAGGTGGTGGTTCGGGACCCCTGGGTCAGTGCTGCTGTTGGTCACCGAAACAGCAGTAGGAGTAAGAGAGAGGAACAGGGGGTAACGCCACTCCCACAACAGCCAGCTCTGGGGTGAGgttcaagtgtgtgtgtgtgtgtgtgtgtgtgttgtcttcaTCTCTCCACTGCCAATTCCAAATTGAGGGacatgaacagaaaaacaaggttgttttatttgaaaagagaagacactccccacccccccagaaaGTGCACAGCTCAGATCTCCTCACTGGGACGTCCTCTGGATGAACCAACAAGagtttgatgtttattttatcaaaacTCCAGTTACTGTAATtccaattgtttgtgtgtgaaaaactGTTTCTCTTCTCCAGACGAGTcccaggtctctctctctctctctctctctctctctctctgggaaaACACAGTTATTTTGCTGCCACagaaccaaaaaagaaaacagaaaaaaggggAAACGGCTGTAGACCGCAGAGGGACAGCAGAGCAGCGCGGCGGCTCACACAGGAAGTCCTCAGAATAAGCTGCCCACCCCAAGTGGCTCAGTGACCTCACTTCCTGCAGGCAGCACCACTGCCTCCAAGTGgcctccctcccccaggaggcCTTACTGGTTAGTATTTAACACTGgaaggaccaaaaaaaaaaaagataaaaacactagtctttattttgtttctgtgaacTACTTTctgatgaaaaacatacaaagtcACCGGAGCACTGTCGCACACAGGCGAACCGCATGGCCACGGTAGGGCCTTCACACGGCCGGCACTGCTAACAACCCAGACTGGCCCCTGGCTGGGACGGACAGACCGAGAGCTCCTGGAATCATGGCCttgagagtgagagacagacatcGCCCCCACACTCCTCTCGTAAGTGCTGCATAATTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73548 lncRNA upstream 52188 45276488 ~ 45277596 (+) True G58830
TU73541 lncRNA upstream 54751 45266939 ~ 45275033 (+) True G58825
TU73492 lncRNA upstream 131520 45194523 ~ 45198264 (+) True G58792
TU73472 lncRNA upstream 186312 45143175 ~ 45143472 (+) True G58776
TU73340 lncRNA upstream 406084 44922084 ~ 44923700 (+) True G58668
TU73534 lncRNA downstream 6749 45339605 ~ 45398453 (+) True G58821
TU73604 lncRNA downstream 179780 45512636 ~ 45513047 (+) True G58876
TU73708 lncRNA downstream 240414 45573270 ~ 45575964 (+) True AMCG00009760
TU73715 lncRNA downstream 249663 45582519 ~ 45584669 (+) False AMCG00009758
TU73710 lncRNA downstream 251902 45584758 ~ 45585330 (+) True G58971
AMCG00009749 mRNA upstream 17392 45309557 ~ 45312392 (+) True AMCG00009749
AMCG00009736 mRNA upstream 75603 45251935 ~ 45254181 (+) True AMCG00009736
AMCG00009734 mRNA upstream 87880 45236167 ~ 45241904 (+) True AMCG00009734
AMCG00009735 mRNA upstream 109097 45212567 ~ 45220687 (+) True AMCG00009735
AMCG00009737 mRNA upstream 141672 45187220 ~ 45188112 (+) True AMCG00009737
AMCG00009743 mRNA downstream 43582 45376438 ~ 45389713 (+) True AMCG00009743
AMCG00009753 mRNA downstream 57896 45390752 ~ 45396023 (+) True AMCG00009753
AMCG00009751 mRNA downstream 89671 45422527 ~ 45435865 (+) True AMCG00009751
AMCG00009752 mRNA downstream 105113 45437969 ~ 45453979 (+) True AMCG00009752
AMCG00009750 mRNA downstream 133803 45466659 ~ 45476997 (+) True AMCG00009750
TU73437 other upstream 271910 45056065 ~ 45057874 (+) True G58747
TU73251 other upstream 677817 44632750 ~ 44651967 (+) True G58600
TU73244 other upstream 730456 44584562 ~ 44599328 (+) False AMCG00009700
TU73232 other upstream 759253 44567365 ~ 44570531 (+) True AMCG00009694
TU73161 other upstream 941820 44386497 ~ 44387964 (+) False G58522
TU73602 other downstream 175338 45508194 ~ 45509104 (+) False AMCG00009761
TU73611 other downstream 227121 45559977 ~ 45571635 (+) True AMCG00009759
TU73851 other downstream 421730 45754586 ~ 45755115 (+) True G59084

Expression Profile