RNA id: TU73548



Basic Information


Item Value
RNA id TU73548
length 1070
lncRNA type inter_gene
GC content 0.52
exon number 2
gene id G58830
representative True

Chromosome Information


Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 45276488 ~ 45277596 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GGTTATCAGACggcacagtgagagagaaagagagggacagagagagagaggagggagagggggtagGCTCTGTCAGCAAGAGGACAGAGGTTAAAGacaaaacactaacacacacacagacaacacactgacacactcaacGCATGCACCCCCTCAGAGAcgcacacaacaaacacaaccagtgagtttttaatattttattatttctacacaaacacacctatCATCTTAGCCACCGAATCAGAACACGTCCGGGAGGCACTGGAATGAGCGACTACAACCAGGGAAGAGGCAATGCACGGATGCACCACAGCagtctgtggggaaaaaaagacgttataaggagagagagaagcagagacaGCGAGAGGAAGAGGCcaagagagggacagggagaggacAAGACCAAGGccgagagagggacagggacaggaagaggctgagagagggacagggggaCGGGGAAGGACCGGGGGCGGGGTGAGAGACGGGCAGCGCTGGGTGTGCGGCTCTGGGACGGTGCTTCCCTAGAAAAGCGCTACTGTGAACCAGGGCTCTTATCTCTGTCGCACAGAGACAGTGCTGAGCAATAGCGAGACCCCAATACACAGGGGACTGAAACAGCGGCTCCCTCACGCCCACCAACCCGCCTGCCCTCGCCCTTGCGTTCTCTCTCTTCAgcctctctatctccctcttcCTGATTGcgttctctcttctcttctatcttccctctctctgtctctgattCTGTTCAGTCCCCggcctctatctctctctctctccacgtCTCTCTGTGATTCATTTCTATCTCggttattctctctctctgccgcAGAGACGCAGGCCAGTCCAGCCGGGTCTCAGCCcacagtgtgtgcgtgtgtttgtgtgagagagaggtttCTGCAGAGGAACAACCAGGTTTCACAAGCTTTAAATAAGAGGATCTCAATACcacagcacaaaacacacagcgcCCAcaggtatatatacacactgacacacagcgcccatagatatatatacactcacctaaaggattattaggaacaccatactaatactgN

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU73541 lncRNA upstream 1455 45266939 ~ 45275033 (+) True G58825
TU73492 lncRNA upstream 78224 45194523 ~ 45198264 (+) True G58792
TU73472 lncRNA upstream 133016 45143175 ~ 45143472 (+) True G58776
TU73340 lncRNA upstream 352788 44922084 ~ 44923700 (+) True G58668
TU73326 lncRNA upstream 354851 44918043 ~ 44921637 (+) True G58660
TU73535 lncRNA downstream 52188 45329784 ~ 45332856 (+) True G58822
TU73534 lncRNA downstream 62009 45339605 ~ 45398453 (+) True G58821
TU73604 lncRNA downstream 235040 45512636 ~ 45513047 (+) True G58876
TU73708 lncRNA downstream 295674 45573270 ~ 45575964 (+) True AMCG00009760
TU73715 lncRNA downstream 304923 45582519 ~ 45584669 (+) False AMCG00009758
AMCG00009736 mRNA upstream 22307 45251935 ~ 45254181 (+) True AMCG00009736
AMCG00009734 mRNA upstream 34584 45236167 ~ 45241904 (+) True AMCG00009734
AMCG00009735 mRNA upstream 55801 45212567 ~ 45220687 (+) True AMCG00009735
AMCG00009737 mRNA upstream 88376 45187220 ~ 45188112 (+) True AMCG00009737
AMCG00009738 mRNA upstream 91756 45175166 ~ 45184732 (+) True AMCG00009738
AMCG00009749 mRNA downstream 31961 45309557 ~ 45312392 (+) True AMCG00009749
AMCG00009743 mRNA downstream 98842 45376438 ~ 45389713 (+) True AMCG00009743
AMCG00009753 mRNA downstream 113156 45390752 ~ 45396023 (+) True AMCG00009753
AMCG00009751 mRNA downstream 144931 45422527 ~ 45435865 (+) True AMCG00009751
AMCG00009752 mRNA downstream 160373 45437969 ~ 45453979 (+) True AMCG00009752
TU73437 other upstream 218614 45056065 ~ 45057874 (+) True G58747
TU73251 other upstream 624521 44632750 ~ 44651967 (+) True G58600
TU73244 other upstream 677160 44584562 ~ 44599328 (+) False AMCG00009700
TU73232 other upstream 705957 44567365 ~ 44570531 (+) True AMCG00009694
TU73161 other upstream 888524 44386497 ~ 44387964 (+) False G58522
TU73602 other downstream 230598 45508194 ~ 45509104 (+) False AMCG00009761
TU73611 other downstream 282381 45559977 ~ 45571635 (+) True AMCG00009759
TU73851 other downstream 476990 45754586 ~ 45755115 (+) True G59084

Expression Profile