RNA id: TU73805


Basic Information

Item Value
RNA id TU73805
length 692
lncRNA type inter_gene
GC content 0.59
exon number 2
gene id G59047
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 45701967 ~ 45702889 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCCCCACCGCACAGCTACAATCACAGAGTCTCTCCTGCCCCCCCCTTCTCTGTCTGTTTATTCCTGATGACTGAGAATCCCTGGGTTTGCTACACACgttagaggagagagagaggggatccTTCAATACTAAACActcaacagagagagaaagagagagaaagagagagagagagagggagagaaacccTGATCGATATTGTGATGAACTCTGGAATTGCAGCCACAGTACAGAGACTCCCAGAGATGCTcgtttctctcctctgtgctgagacacacaaacactctcacTACTGTGACTCAGAGaccatccccctccctcccctctcttaGGTCTGCACGctcttttcctccctccctctccctctttccatctctctgtctccgtGCGTCTCAGGGCTGCATGCGGATCCCCCCGTCCAGCCGGATGACTTCTCCGTTGATCATGGGGTTCTCGGCCAGCGCCTGCACCAGGTGGGCGAACTCCGCGGGGTCTCCCAGCCGGCTGGGGAAGGGCACCTGCCGTGCCAGGAAGGTGCGCACCTTCTCAGGTAACCCGGCCAGGAGTGGAGTGGAGAAcaggcctGCGCGATGGTGACCACACGGATGCCCATGGGCGCCAGGTCCCGCGCGATGGGCAGAGTCATGCCCACAATGCCCCCCTTCGAGGCTGAGTACGCAGCCTGGccaac

Function

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0055003 cardiac myofibril assembly biological_process
GO:0055004 atrial cardiac myofibril assembly biological_process
GO:0055006 cardiac cell development biological_process
GO:0055007 cardiac muscle cell differentiation biological_process
GO:0055011 atrial cardiac muscle cell differentiation biological_process
GO:0055013 cardiac muscle cell development biological_process
GO:0055014 atrial cardiac muscle cell development biological_process
GO:0035051 cardiocyte differentiation biological_process
GO:0061061 muscle structure development biological_process

KEGG:

id description
ko00190 Oxidative phosphorylation
ko04260 Cardiac muscle contraction
ko05012 Parkinson disease

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73780 lncRNA upstream 18326 45675703 ~ 45683641 (+) True G59028
TU73778 lncRNA upstream 27265 45673929 ~ 45674702 (+) True G59026
TU73754 lncRNA upstream 61930 45639635 ~ 45640037 (+) True G59006
TU73710 lncRNA upstream 116637 45584758 ~ 45585330 (+) True G58971
TU73711 lncRNA upstream 116637 45584824 ~ 45585330 (+) False G58971
TU73840 lncRNA downstream 43052 45745941 ~ 45746254 (+) True G59076
TU73845 lncRNA downstream 44631 45747520 ~ 45748462 (+) True G59078
TU73843 lncRNA downstream 44678 45747567 ~ 45748462 (+) False G59078
TU73848 lncRNA downstream 48683 45751572 ~ 45752007 (+) True G59081
TU73849 lncRNA downstream 49181 45752070 ~ 45752497 (+) True G59082
AMCG00009762 mRNA upstream 41481 45656761 ~ 45660486 (+) True AMCG00009762
AMCG00009765 mRNA upstream 45730 45650084 ~ 45656237 (+) True AMCG00009765
AMCG00009764 mRNA upstream 54426 45643238 ~ 45647541 (+) True AMCG00009764
AMCG00009763 mRNA upstream 72589 45598607 ~ 45629378 (+) True AMCG00009763
AMCG00009758 mRNA upstream 117240 45576539 ~ 45584727 (+) True AMCG00009758
AMCG00009772 mRNA downstream 172744 45875633 ~ 45879015 (+) True AMCG00009772
AMCG00009778 mRNA downstream 201998 45904887 ~ 45913188 (+) True AMCG00009778
AMCG00009780 mRNA downstream 216542 45919431 ~ 45921344 (+) True AMCG00009780
AMCG00009782 mRNA downstream 278200 45981089 ~ 45993288 (+) True AMCG00009782
AMCG00009781 mRNA downstream 297153 46000042 ~ 46021930 (+) True AMCG00009781
TU73611 other upstream 130332 45559977 ~ 45571635 (+) True AMCG00009759
TU73602 other upstream 192863 45508194 ~ 45509104 (+) False AMCG00009761
TU73437 other upstream 644093 45056065 ~ 45057874 (+) True G58747
TU73251 other upstream 1050000 44632750 ~ 44651967 (+) True G58600
TU73244 other upstream 1102639 44584562 ~ 44599328 (+) False AMCG00009700
TU73851 other downstream 51697 45754586 ~ 45755115 (+) True G59084

Expression Profile