RNA id: TU73845



Basic Information


Item Value
RNA id TU73845
length 943
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G59078
representative True

Chromosome Information


Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 45747520 ~ 45748462 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


cacacacagacactcaaccCTCTTGTTTATAAAAGAAAGTTTAATGGCTGAGTCCATTCTGGTCTCATTAAACCCAGCAGTCACATGACTGTGGTCAGTACACAGGTCATAACACTCCTCTTTCAATTTGATTATGTTTTCTAAATctttcccatttttattaatcatGGTTCTCTGAAGTgagtgaaaatattttttatttttgtagaaaatAAGGGAACAGAACGGAGCCGGAGACACATCAACAACGAGTATAATAACACATAAAAGTCATGGATAATAAAGTGAGGTTAAGAATGGACTGGATCtatagacacagagagagggggtgtgtcagtgtgtcaatcagtcagtaaTCTGtcatactgacacactgactgactgacacacccaGCACACCCCCTTCCTCTGAGTGGAGAAGAAATAATTATTGATAAACACATGATTGGTCATCAGAACTCTGGgatttaattgaagaaaaaaaaaaaaaaaaaaaagacacaaaggtTAATTGTTAACATTAACAACACTAATTACAGCTCTACAGCCAGGCAGGCGGGGCAGGAGGAACAGGTGCTGAAAATTACCAAGCCTaattatattcataatattaattaaaacgaccacaataataaaataattataatcatataaaAGTCATAAATTCCTCAAcagtaacaaacacacaaaaacacatttaaagctACAGTCTGCCTGAGCATTCCTAGTTCACTGCCTGACCGTTCCTAGTTCACTTTCCCTAAATTTAgaattttatataaatgcattgatatacttttttggggggacgggacgggacgactcattgttttttttatttttttttattaaatctgtaaaaaataGTTAATTGTTGTccttcttaaaaaaactaaaaactaaacaaaaccacttaaaacaagaaatgaaacAACCCCCCCAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU73840 lncRNA upstream 1266 45745941 ~ 45746254 (+) True G59076
TU73805 lncRNA upstream 44631 45701967 ~ 45702889 (+) True G59047
TU73780 lncRNA upstream 63879 45675703 ~ 45683641 (+) True G59028
TU73778 lncRNA upstream 72818 45673929 ~ 45674702 (+) True G59026
TU73754 lncRNA upstream 107483 45639635 ~ 45640037 (+) True G59006
TU73848 lncRNA downstream 3110 45751572 ~ 45752007 (+) True G59081
TU73849 lncRNA downstream 3608 45752070 ~ 45752497 (+) True G59082
TU73850 lncRNA downstream 4260 45752722 ~ 45753672 (+) True G59083
TU73852 lncRNA downstream 7127 45755589 ~ 45755956 (+) True G59085
TU73853 lncRNA downstream 7790 45756252 ~ 45756770 (+) True G59086
AMCG00009762 mRNA upstream 87034 45656761 ~ 45660486 (+) True AMCG00009762
AMCG00009765 mRNA upstream 91283 45650084 ~ 45656237 (+) True AMCG00009765
AMCG00009764 mRNA upstream 99979 45643238 ~ 45647541 (+) True AMCG00009764
AMCG00009763 mRNA upstream 118142 45598607 ~ 45629378 (+) True AMCG00009763
AMCG00009758 mRNA upstream 162793 45576539 ~ 45584727 (+) True AMCG00009758
AMCG00009772 mRNA downstream 127171 45875633 ~ 45879015 (+) True AMCG00009772
AMCG00009778 mRNA downstream 156425 45904887 ~ 45913188 (+) True AMCG00009778
AMCG00009780 mRNA downstream 170969 45919431 ~ 45921344 (+) True AMCG00009780
AMCG00009782 mRNA downstream 232627 45981089 ~ 45993288 (+) True AMCG00009782
AMCG00009781 mRNA downstream 251580 46000042 ~ 46021930 (+) True AMCG00009781
TU73611 other upstream 175885 45559977 ~ 45571635 (+) True AMCG00009759
TU73602 other upstream 238416 45508194 ~ 45509104 (+) False AMCG00009761
TU73437 other upstream 689646 45056065 ~ 45057874 (+) True G58747
TU73251 other upstream 1095553 44632750 ~ 44651967 (+) True G58600
TU73244 other upstream 1148192 44584562 ~ 44599328 (+) False AMCG00009700
TU73851 other downstream 6124 45754586 ~ 45755115 (+) True G59084

Expression Profile