RNA id: TU73850



Basic Information


Item Value
RNA id TU73850
length 951
lncRNA type inter_gene
GC content 0.59
exon number 1
gene id G59083
representative True

Chromosome Information


Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 45752722 ~ 45753672 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CCTTGCCCTTCTTCAGGGTGTGTTTGGTGTGGATCTCCAGCAGGTCCAGCTCTCCGGCGCCCCCTGCTGCCCCCAGCGTCTCCTTGCTCTTGCGGCCCCTCTTCTTGCCTCCCGCCACCGCTGCCGCCCCCTCCTTTGGCTTGGGGCCCCTCTTCCTCCCAGGGGGTCGGCcaggcggtggggggggggtgtggtgAGGGGAGGGGACCCCCCGCGGACCCCCAAACGGACCCCCCGTCTTCCCCAGGTTCTGCTGGAAGATGTCCtgcagacacagaaagagagagagagagagagagaatcagtGTTTTAGAGAGTCAGGCAGCGTGTCATTCAGTGAGTGAGCGTCTGTCAGTGCGTCAGGGCTCACCTCCACCAGTCGTATCTCCTTGGCCAGCTCCTTGACCAGCTGCTGTGTCTTGATGGTCTCTGGGATCTCCTCCTCGTGCTCCGGCAGGGCCTGGGGTCAAATCACAGGACAGGGAGTCAAAACAGAGCAGTGACAGAACACACTGGGGGAACGCAAGGGGACAGTGTGTGAGCGAGTGCGAGTGTGCGCAGTGCGTGTTTACGGTCAGTGCAGTGTCAGTGCAACTGTTTGTAGTGTGCAGAGTTAGTACAGTGAGTGTGGTGCATTACAGCATGTTGAGCCTGTAGTATGTTTATTGCAGTTGAGTGTTGTGGCACGTGGTAGTGCGTCGTGGCATGTAGCATAGTGTTGTGGCACACTGAGACCTCCTTGCGTGTCCAGGTGCGGAAGGCGTTGTTCAGGGCCTTGGCTCCATGCACCAGATACGCAGCCGGGTGGCGCCGGTTCTCTCTCAGACCTGCAGGGGGCGAGAGAGAAAGTTATAGTCTGTTAGTGTGTCCGCAGTTTATTGCAGTGGGTGTTACACTGCTGATGTCACTGTTGTCAGTGTTGTTCACAGCGCTGATTTCACAGCGTAGTGC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU73849 lncRNA upstream 225 45752070 ~ 45752497 (+) True G59082
TU73848 lncRNA upstream 715 45751572 ~ 45752007 (+) True G59081
TU73845 lncRNA upstream 4260 45747520 ~ 45748462 (+) True G59078
TU73843 lncRNA upstream 4260 45747567 ~ 45748462 (+) False G59078
TU73840 lncRNA upstream 6468 45745941 ~ 45746254 (+) True G59076
TU73852 lncRNA downstream 1917 45755589 ~ 45755956 (+) True G59085
TU73853 lncRNA downstream 2580 45756252 ~ 45756770 (+) True G59086
TU73854 lncRNA downstream 3438 45757110 ~ 45758269 (+) True G59087
TU73858 lncRNA downstream 6003 45759675 ~ 45763138 (+) True G59091
TU73912 lncRNA downstream 120451 45874123 ~ 45874432 (+) True G59128
AMCG00009762 mRNA upstream 92236 45656761 ~ 45660486 (+) True AMCG00009762
AMCG00009765 mRNA upstream 96485 45650084 ~ 45656237 (+) True AMCG00009765
AMCG00009764 mRNA upstream 105181 45643238 ~ 45647541 (+) True AMCG00009764
AMCG00009763 mRNA upstream 123344 45598607 ~ 45629378 (+) True AMCG00009763
AMCG00009758 mRNA upstream 167995 45576539 ~ 45584727 (+) True AMCG00009758
AMCG00009772 mRNA downstream 121961 45875633 ~ 45879015 (+) True AMCG00009772
AMCG00009778 mRNA downstream 151215 45904887 ~ 45913188 (+) True AMCG00009778
AMCG00009780 mRNA downstream 165759 45919431 ~ 45921344 (+) True AMCG00009780
AMCG00009782 mRNA downstream 227417 45981089 ~ 45993288 (+) True AMCG00009782
AMCG00009781 mRNA downstream 246370 46000042 ~ 46021930 (+) True AMCG00009781
TU73611 other upstream 181087 45559977 ~ 45571635 (+) True AMCG00009759
TU73602 other upstream 243618 45508194 ~ 45509104 (+) False AMCG00009761
TU73437 other upstream 694848 45056065 ~ 45057874 (+) True G58747
TU73251 other upstream 1100755 44632750 ~ 44651967 (+) True G58600
TU73244 other upstream 1153394 44584562 ~ 44599328 (+) False AMCG00009700
TU73851 other downstream 914 45754586 ~ 45755115 (+) True G59084

Expression Profile