RNA id: TU73854


Basic Information

Item Value
RNA id TU73854
length 1160
lncRNA type inter_gene
GC content 0.59
exon number 1
gene id G59087
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 45757110 ~ 45758269 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCTGCTTTTATCCGGACAATACTAACCTGCTCACTGTCACATCAGATCACTGCACACTCCCGACTGCGGAGCGCACTGCTGCCGCTGCCAGCGTCTACTGTGGTCACGGAGACTACCCTGCGCGCTGCCACACGGGCATTCAGTGCCAGCTGCTGCCGAGCGATGTGTGGGAGCCCCGCTGCTGAGCCCCGCCGCTGCGAGAGGACGGGGTCGCGCTGACTGGCGGTCCGTGTGGAAGCGGTTAATGGGGAGCTCTGAGCCGGAGATGTGATCAGACAGGGGTGGATGCGGTGCGTTAGTGTTTGCTGTGCGGATCAAAGCGTGTGTTTACACTTTAAAGGGGTGTCAAAGCCGGATCCGGAGCACACCGAGGCGCGGCGCTCTGGAGCCCCGTTGTCAACACTACCGGGGCTGTATCCTGTGCTTTAACAACACAGTTCAGTGTTCGTGTGAAAACAGTACGAAGTtgctgtttgtgtctttttttccctcagtatCTAGACGTTGCTACCCGAGTGGGCCAAAAACAACCCGCGCTCGTCCAGGAACACAAAACAACCTACCGGCTCCAAGTTCTCCGCTGCTGCGGGGCGCCCAGCACTCGGAATCGGCTTGTCCCTTAACTCGGGGACGGGGATTCGACACGGCCCAGGCTGGGAATGGCGAATTTCTCCAAAACCGAGCCGAGGACGGAGCTTTCGATCACAGATGTGGTTCGACGGGGTCGAGGGGCTCCCGAGTCGGCGGGTCCCGGGCTCCGAGGGTCGAAATGCCCGCTTAGTCCGCACGTAGAAGCGGAACAATTTTGAACAAGAGTGAGAACCGCGCTAAACCGACGCCATTACTCCGCCGACCAGCGCcgactgtctctctgtctgcccgCTGGGGGCGAACAATAAAGTTTGAGCGAAATCTAGGCctgtgttgttgtggttgttatgAAGACAGCTGGCCCCGTTGTCTGTTCATATGATAAATAACCTCAGATTAATAAATTCAATTGGTGTTTCTCGCCCAGCACGACGCGTGTGTTCATCCGCACAGCAGACCCGCTCCCTCCGTGTGCAAACGCGTGCTTTGCCATTCGGGCCTACTGGACCCGGCCGGTGCTGCCGGACAGGGCTGACCCACACTGTCCGGCCCGGGCAGCGGCTCTGTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73853 lncRNA upstream 340 45756252 ~ 45756770 (+) True G59086
TU73852 lncRNA upstream 1154 45755589 ~ 45755956 (+) True G59085
TU73850 lncRNA upstream 3438 45752722 ~ 45753672 (+) True G59083
TU73849 lncRNA upstream 4613 45752070 ~ 45752497 (+) True G59082
TU73848 lncRNA upstream 5103 45751572 ~ 45752007 (+) True G59081
TU73858 lncRNA downstream 1406 45759675 ~ 45763138 (+) True G59091
TU73912 lncRNA downstream 115854 45874123 ~ 45874432 (+) True G59128
TU73930 lncRNA downstream 186363 45944632 ~ 45997710 (+) False AMCG00009782
TU73927 lncRNA downstream 234905 45993174 ~ 45997710 (+) False AMCG00009782
TU73931 lncRNA downstream 234905 45993174 ~ 45997710 (+) False AMCG00009782
AMCG00009762 mRNA upstream 96624 45656761 ~ 45660486 (+) True AMCG00009762
AMCG00009765 mRNA upstream 100873 45650084 ~ 45656237 (+) True AMCG00009765
AMCG00009764 mRNA upstream 109569 45643238 ~ 45647541 (+) True AMCG00009764
AMCG00009763 mRNA upstream 127732 45598607 ~ 45629378 (+) True AMCG00009763
AMCG00009758 mRNA upstream 172383 45576539 ~ 45584727 (+) True AMCG00009758
AMCG00009772 mRNA downstream 117364 45875633 ~ 45879015 (+) True AMCG00009772
AMCG00009778 mRNA downstream 146618 45904887 ~ 45913188 (+) True AMCG00009778
AMCG00009780 mRNA downstream 161162 45919431 ~ 45921344 (+) True AMCG00009780
AMCG00009782 mRNA downstream 222820 45981089 ~ 45993288 (+) True AMCG00009782
AMCG00009781 mRNA downstream 241773 46000042 ~ 46021930 (+) True AMCG00009781
TU73851 other upstream 1995 45754586 ~ 45755115 (+) True G59084
TU73611 other upstream 185475 45559977 ~ 45571635 (+) True AMCG00009759
TU73602 other upstream 248006 45508194 ~ 45509104 (+) False AMCG00009761
TU73437 other upstream 699236 45056065 ~ 45057874 (+) True G58747
TU73251 other upstream 1105143 44632750 ~ 44651967 (+) True G58600

Expression Profile