RNA id: TU73858


Basic Information

Item Value
RNA id TU73858
length 3392
lncRNA type inter_gene
GC content 0.43
exon number 3
gene id G59091
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 45759675 ~ 45763138 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TACGGGCAGAGACAGACAAGAGAAACAACCTATCTTTACTAAAAgaatagattttatttcagcACTGTAAGTTTCCTTCCAACAGTAGAAGCAAAACAGCCAACATCCTCTTTTCACCTGAAATCTTCTGCTCACTTGTTCAATCAATCGTTTGTGTTCCACTAATACAGACCAATAGAAACCCCTTCCTCCCAAACAAGCAGCTCCTTCTCgcttaaaacaaatacaaaataaaaatgaaataaaacaaaaaaatccaaaagaTACAATCAATAATCACGTCTCTTTTCACAAGACTCCAACAAAATGACTGGtttcattttccaaaactaaaaagaaaagaaaaaaaaaaaacgcaaaaaaaaaaaaacgcaaaacaaaatacaatccCAAATCTTTCCAATTCTAACACCGAATGTTGAAGGTGTCTCGGCTGACGGAGGGGTCTGTCTGTTATGCGATTGGATGTGATTTTTGCAGGGAAAACGAGCTTGTAATACCGTCTTTATACCACTAGATGTCGAGGGGGAGTTACTAACAGCATTAAAACGAGGGCGACCAGAATGACAGGACCAAAAAACGGCAAAGAGTAcagatttacttttattaatttcactATATGTGTCTTCATATATACTGTGTAGATTACAAGCAGGGAGCGGTGCTAAAACTACAATTCAAAAATTAAAACCCCAAAAACAGATCCTTTTCTCAAACCAGGTCAGTGTAGCGGATGCCAAACTAAATAAGAACGCGACGCGTTTTCAGATTGTGATCTTATGAAACTAAAGGTTGACTTTtcgtaatttattttcagtattgtcGGTTTCTTGTGTATTTCTTGCGTTCAGGTCTCGTTATCTCACTAAGAAGCTCTGTCCTATACTCACAACTACACAACGTTATACTGAgttaataccaataataatatgGCCTACTATCGATCGGTCAGTCAGTGGGAGTGGACGGGGGCACGGGAAGGagaagagagggatggagagatggCAGGatggaggggagaggagaggaaatgggagggacagacaggtaGGTAGGCAGGCAGGGAGTCAGTACAAAAGCATTCTGAATTATTActaatatatagattttaaaaaacgttaatttttttgttgtgttttgtattttgtatttttttttgtttactttatggTTTCTTCTCCTACAAGTACAAGAATCATCACGACCGAGAGGAGGGGGGTCTGAACAACTAGGACAACGGGAACAATAGTAAGAATGTCAGTTAGGGTCTAagtattactttaatttatttttaagttgtgttATATAAATCAGCTTTATTATCTAGAAGagttataaacaaaaaaaaaatacaatgaggAGAGCGGGGGGGTATGGGTCCAGGACTCGGAAGCAGAGTCTCTGaaaactacaaagaaaaaataggAACATCTGTCTGTCAACCCAGACAAGATctataaactaaacaaaaagacaCGACAGCATTCTCTCAACACCACCAAgaggtgcctgtctgtgtgtcagagtgtgtgtgtgtgttgtgcgtgGGTGTCCATCCGCCTGTCGGTACGTGTGTTGGTCAGTGTCACGGTGTCCGTCTGTGCTACTGTAGCCGTCCTGGTGTCTGTGTGAGCACGTCAGTCCGACTGTAGTACCGTGTGTCAACGTGCGGTGCTGTCACCGTGTCTGTGACGTCACAGGTGGAGACAGGTCACCCCCGCAGCTCCACAGCTCGGAGCACAGCCTGCCGGGGGTGAGCAGTCAATCacatcaaaaatataaacgTAGAGAAACAGACCGATATTTTAGtgggttaaagaaaaaaaacaaaggaataatCTAATAATCCAAAAtgataatacagtacaaatgtgGGCAGACAGCAATACAGATGGCAAGAAATagaaacaggattttaaaatgattattattaatatttaatttgttatatatatatatatatatatatatatatatatagatagataagatCTGTGGCATGAGCAATTATAATTCATAtcatcttttatcttttttaaatgatcatatTTAGGTCACATCTCAGGCTGAACGAATAAGGTGCTCTGCAGGACGAGCCGAACCGTGCGGTTTGCTgttacagctgggtttttaaatgtctggggggggaggggagcagGGCCACTCAGTGCAGGGAGATTGGACACGGGGGAGGCAGGGAGGATCCAGGGAGTGAAATCCTCGTATTTTAGTCCCTAATTTTTTAGCCTGGCATGGGAGGGTTAATCCAGCTGCTGTCCGCACCTGCCCCGCTGAGCTGCCCTCCTGCTCCGCTGTGCAAGTGCTCAGAgacatttaaacatatacatttattttttggtgcgaaacaagattttaaatattctctCCTTCGAGGGGAGTTGGGGATTGTTAAAAGTGACAATTTGtaaatttatatttacagttaaagtgatttaaaaaagaaagatatttCAGTCGGTGTCAGAGGCCGCTTGGCTACAGCAGGCGGGGGTTCTCCACCCTGCCCCCAGGGGCCAACGCTCTCCTGGCGTGCACTCGCTTGATTGAGCATTTAATTGGACTTAATTAGACCTAAACTGCTCTCAGAACCTGAAACCCACCGAGACTCAGAAGGTGGCGAAGACcctgaaaaacattaaaaatgaaaccgcattaaaattcaaaatgtctAAAATCAGGCAAACTTTAATTGGGTCCAATTAACATTGGAATTGTGGAGGGGAGGGGCAGACTCCTGTGATTGTCAAAATGAACTCAAGATGGACATCATTATCGCCGGACAGACAGGCCAGCGGGGCGCGGGGGCGGGCTGGAGCTCCGGCCCTGTGCAGAGAGCCACCCTGGCCTGGCCGAACCGCAGCCTTAATTGAAACGgattgcttaattgaatttcAGGTTTGTCAATTTGCAAGTACTTTTTTGTTCCCCCCCAGTTCTTATAAAGTGGGTTTCAATCTGTAAAAACATCATTGGTTAGATTTCTTTTCCATTTAAGAATGAGAAgaatcaattcaattaaaacatcctCGTCAAGccaattaaaatttaaattaaggctacaagaaaagaaaaatcaactgAGCAGTAACTGCAGCTAACCGAGCCACGTTGGGCTCCAGCCAGAACACTTCTGAGCCCCCTACAGCACCGCCTGGGGCCTGGAGCCTGTGTGCATGTATAGTGGAGAAAAGAGGGGACGGGGGACTACATTTCCCATGAGGTTGTGAGCCTAGCAGCTGACAGCACAACGAGGGTGTCCTAGCAAGCAGAGGCGCTCGCGCTCTCTCAGTTTCAGACACTCAAGTGCCGTCTCTGTCCCCAGGCTGCTCCTCTCACCACTTCACCCCGAAGCACAGGAACAGCTGCCtctc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73854 lncRNA upstream 1406 45757110 ~ 45758269 (+) True G59087
TU73853 lncRNA upstream 2905 45756252 ~ 45756770 (+) True G59086
TU73852 lncRNA upstream 3719 45755589 ~ 45755956 (+) True G59085
TU73850 lncRNA upstream 6003 45752722 ~ 45753672 (+) True G59083
TU73849 lncRNA upstream 7178 45752070 ~ 45752497 (+) True G59082
TU73912 lncRNA downstream 110985 45874123 ~ 45874432 (+) True G59128
TU73930 lncRNA downstream 181494 45944632 ~ 45997710 (+) False AMCG00009782
TU73927 lncRNA downstream 230036 45993174 ~ 45997710 (+) False AMCG00009782
TU73931 lncRNA downstream 230036 45993174 ~ 45997710 (+) False AMCG00009782
TU73940 lncRNA downstream 255196 46018334 ~ 46022184 (+) False AMCG00009781
AMCG00009762 mRNA upstream 99189 45656761 ~ 45660486 (+) True AMCG00009762
AMCG00009765 mRNA upstream 103438 45650084 ~ 45656237 (+) True AMCG00009765
AMCG00009764 mRNA upstream 112134 45643238 ~ 45647541 (+) True AMCG00009764
AMCG00009763 mRNA upstream 130297 45598607 ~ 45629378 (+) True AMCG00009763
AMCG00009758 mRNA upstream 174948 45576539 ~ 45584727 (+) True AMCG00009758
AMCG00009772 mRNA downstream 112495 45875633 ~ 45879015 (+) True AMCG00009772
AMCG00009778 mRNA downstream 141749 45904887 ~ 45913188 (+) True AMCG00009778
AMCG00009780 mRNA downstream 156293 45919431 ~ 45921344 (+) True AMCG00009780
AMCG00009782 mRNA downstream 217951 45981089 ~ 45993288 (+) True AMCG00009782
AMCG00009781 mRNA downstream 236904 46000042 ~ 46021930 (+) True AMCG00009781
TU73851 other upstream 4560 45754586 ~ 45755115 (+) True G59084
TU73611 other upstream 188040 45559977 ~ 45571635 (+) True AMCG00009759
TU73602 other upstream 250571 45508194 ~ 45509104 (+) False AMCG00009761
TU73437 other upstream 701801 45056065 ~ 45057874 (+) True G58747
TU73251 other upstream 1107708 44632750 ~ 44651967 (+) True G58600

Expression Profile