RNA id: TU73975


Basic Information

Item Value
RNA id TU73975
length 1634
lncRNA type inter_gene
GC content 0.53
exon number 2
gene id G59169
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 46169761 ~ 46187549 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACCAAGTTGACTTTGTACAGTTTTATTGAAAAGCAGAGCAAACAAAGAGTTGAGGTCAGTCGGAACCCCCCCTCCTCACAGGACACGCCAGCGACACGCCAGGGAGGAGACGAGCTCTGCGtccatcagtgtgtgtgtttgtaagtgtGTTAAGAGTCACGGGAGGAGCTGTCTTTGACATCAGTGCtctctgtgtacagtgtgtgtgcgttaGGAGTCCGAAGAGGAGCGGTCTTTGACAtcagtgctcagtgtgtgtgtgtgttgtgtgcgcgctcactgtgtgtgcgtgtgcgcgcaCAGTGTGTGTTAGGAGTCCGAAGAGGAGCTGTCTTTGACGTCTGTGCTCTCGGTGGCCTCGCTGACTTCGCTCACATCCTTGCTATCCCCCCCGCTGTCCTGGGGGTCGTCCAGCTTCCCGGGGAGGAGTGGGGCAGCACCGCCCTGGGGTGGGTCAGGCAGAACCCACGGTCGCCCCCTCTCCACCGCCCCCGGCCTGCGcaactgaagagagagagagagagagagagagagagagggggagagagagagggagagagggggagagagggagagcgcaCACTGTACTTTTAAAGCTGAGCGGTTTTAACTGAAGATTAGAAAACCTGCCACAGGTCAGTCGGTGGCTTTATTGCTCCGGTTATCCATTTCTgcacattatatacaaaaagcaaagaaacaaatgaaaacccaCTTTTAAAAGTAACTTCAGTGTGAATTTGGAATGACCCGGGGAGTACAAGCCAGTGTGGCCCTgcatactgcactgcactgttcCATACTGTAGTATACCACACCGCACAATAttgtactatactacactgcaagCACACGCAGTCAGTGGCCAGTGCAGGCTGATGTCAAGGCTCCAGGCTGGATTCAGAGTGACCAGTCCTCCAGGACACTGCCTGTCCGGGTTAGTGGGTCAGTTGTCGCACACCAGTGCAGGGGGTTATCAAAGCATTACCGAGTCATACTGTCATTTATTGCTCTGTCATATTGTAACTCACAGTACTACAGTGCACTGTGGTATACTGTGCTCTAGTATAATGGAATACACTGGACTGCAGTAAACTGCACCACAccatactgtattatactatagtatactgcactgcactcatTTGTACTGAAAACTGCAGTGCAGTTCAGTACAAATGAGTGCAGTGTTTGGGTCCCAGTCGCTGGACTGCCAGAGCAAGAGCCCAAGAGTCCAGCAGCACGGAGGCTGGGActgaggtctctctctctctctctcactccctccctcctcagTCCCAGGTGGCCGCGCTCTCACAGTCGGTGGGGGTTCACCCATTTGTAAGTGCCTTCATAGCGGAACCCCACCTTCTTCAGCAGCTCATCTGCCTCCACCGGCCCCCGGCTgcgagacagagacagagaaagatatTGCTCACCGAGTGTTGCAGTGTGTTGCTCAGTGAGTATTGTGGTGTGTTGCAGTGCGTTGCTCAGTgagtgttgtggtgtgttgctgtgttgcgGTGCGTtgctgtgtgttgctcagtgagtgttgtggtgtgttgcgGTGCGTTGTGGTGTGTTGCTCAGTgagtgttgtggtgtgttgcgGTGCATTACGGTTTGTTACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73955 lncRNA upstream 36255 46065428 ~ 46133506 (+) True G59152
TU73959 lncRNA upstream 41405 46104136 ~ 46128356 (+) False AMCG00009786
TU73960 lncRNA upstream 56905 46112220 ~ 46112856 (+) True G59156
TU73945 lncRNA upstream 140792 46028695 ~ 46028969 (+) True G59142
TU73940 lncRNA upstream 147577 46018334 ~ 46022184 (+) False AMCG00009781
TU73988 lncRNA downstream 3097 46190646 ~ 46195343 (+) True G59180
TU73987 lncRNA downstream 31532 46219081 ~ 46220515 (+) True G59179
AMCG00009786 mRNA upstream 41414 46118522 ~ 46128347 (+) True AMCG00009786
AMCG00009784 mRNA upstream 59765 46105400 ~ 46109996 (+) True AMCG00009784
AMCG00009781 mRNA upstream 147831 46000042 ~ 46021930 (+) True AMCG00009781
AMCG00009782 mRNA upstream 176473 45981089 ~ 45993288 (+) True AMCG00009782
AMCG00009780 mRNA upstream 248417 45919431 ~ 45921344 (+) True AMCG00009780
AMCG00009785 mRNA downstream 17559 46205108 ~ 46217730 (+) True AMCG00009785
TU73851 other upstream 414646 45754586 ~ 45755115 (+) True G59084
TU73611 other upstream 598126 45559977 ~ 45571635 (+) True AMCG00009759
TU73602 other upstream 660657 45508194 ~ 45509104 (+) False AMCG00009761
TU73437 other upstream 1111887 45056065 ~ 45057874 (+) True G58747
TU73251 other upstream 1517794 44632750 ~ 44651967 (+) True G58600

Expression Profile