RNA id: AMCG00009815


Basic Information

Item Value
RNA id AMCG00009815
length 1839
RNA type mRNA
GC content 0.60
exon number 1
gene id AMCG00009815
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 232034 ~ 233872 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGTCAGCAAGGAGCCTAACCACATCCTGACTCCCAGCATTAGTGTGAACCCGGATAAGGCCATGACAGTGCGCTCAGTGCTGCTGAACCGGGATTCCCCTGACATCGAGACACGACTCAAGCGCCGGCGCAACCGTACCCAGCAGGTACGCTtcaaagacctagaagatggcACTGAGAGGAGTTATGTGCCTCACATCCAGAGCCAGCCTGGCCCTGCCAGCCCCGATCCCCCcatcacccccaccccaccacagAGTAGGATAGGCAGACCCCTGTCCTTAGTCCAAGACAGCTGGGACAGCCCAGGACTGGAGAGAATTTCTGTGAATGGGGGCTCGGTGGTAGGCACATTGGGGGGGGGCGTGGGAGCGGTGGCCACAGTATTGGCCCCGCAACGGCCTTGGGCTCAGCCTCGGCCCTGCTCCCTAACGCTGCCCCACCCCCGGCGCAACTGCATGAGCACGGCCATCCAAACCTCGCCCAGCCTGCAGAAGCAATCGGCCACCATTCGTTACCGCAGCCGCAGCATGGGGGACTTCAGGGAGAGTGACATGGGGGAGAGGGTTGAAGGGGAGGACCTGTTGTGCCATCAGAATGACATCCAGCGACTGCTCAACACTCAGGACAGCCCTTCAGAGCCCCACTGTATGGGTCCCTGCCATTGTTTGCCCCAGAAACAGTCACCCGATGAACCCACTCCACTCAGCAAGGAGGGGCTTAGATGTGTCAGAACACGGGGCACAGCAACTCCACCATGTGGTAATCAGGGCCAAAGCCTGACCAAAAGTCACAGCAATGTTCATGCCTGCTGCCTATGTACCCACTACACAGGGATGTCGTccacagagcagtgtgtgtgtcccacTCAGTTCCCTAACCCTATCTCAGGAGGGCACTGCCCCCCATGTGCCACTCCTCCACAGAACAGGGGTTCTCTGGATGGCCTGGATGGGAGGCGGCAGACCCTTGGACGAGCACTGAGTGACCCAGGGAAACCCTTGCCTTGCTCCTGTTCCTGCACTCCCATTACTCATCCACAACCTTCTCAGGACCCCCAGAGGGGTGAGTGGGGTGACACCTGCTCTCCCACACTCCTGCGCTGTGCTATCCAGGACTTGGGCTGCCTTCCAAGGCCCAGTTGCAAAAGAGCCTGCAGAGCAGAACAGCAGTGTGAgccagcagggcagggcagaGTGCACAGCCGGACAGAGGGATCACCGAACGcatggtgggggggcaggatgCTGAGTGTGAGCAGGGAAGGCTCTCATCATAGACCCCCATCTAAGATGGAGGAACTCCAGTGCCATGCAGACAGTAGCCCCAAACTGCAAGGAGGGGGGGGACCCCAGACACCCCCCCTAAACCCCAGTCCGGGGCAGGCCCCTCCAGACAGTGTCTCTGCCACCATCTTCTACACAGAGCCCCTAGCTAATACTCACAGTGGTCAAGAACCCTCCATGTCCCCATGGGTCCCAACCCAGGCCTCAAGCAGGACTCCATGGCCAGAGGGGGCCTCTTTGTCCCCTGAACACTCAGAGACTCTCAGGCAGGTCCATGAGCTCCTAGAAATGGTGGCAGGGACCAAAGGCCAGCTAGACCTGTCCCGAGCTCGAGAGAAGCTACTGTCTCAGGGAGGGACAGCAGAGGGTAAAGTGCCCCCTGCAAGCAGCTCAGGTCAAGGCCGCAGTCAGTCCCTGCACCACGACATCAGCAGTCTACACACACGCCTGCAGAGCATGGAGAATGTCCTGGAGACCAGCCAGAATACCATCAAGGTCCTGCTGGATGTCATTCAGGACCTGGAGAAGAAAGAAGCTGAGCGGGATGGGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU94349 lncRNA upstream 124989 106073 ~ 107045 (+) True G75556
TU94314 lncRNA upstream 134005 91458 ~ 98029 (+) True G75528
TU94316 lncRNA upstream 140251 47559 ~ 91783 (+) False G75528
TU94324 lncRNA upstream 190634 31464 ~ 41400 (+) True G75533
TU94366 lncRNA downstream 70921 304793 ~ 319899 (+) True G75572
TU94403 lncRNA downstream 352992 586864 ~ 608775 (+) True G75600
TU94449 lncRNA downstream 506607 740479 ~ 741030 (+) True G75642
TU94451 lncRNA downstream 509013 742885 ~ 746072 (+) True G75644
TU94559 lncRNA downstream 750724 984596 ~ 995847 (+) False AMCG00009838
AMCG00009810 mRNA upstream 109986 108684 ~ 122048 (+) True AMCG00009810
AMCG00009813 mRNA upstream 124444 107233 ~ 107590 (+) True AMCG00009813
AMCG00009818 mRNA downstream 398522 632394 ~ 654167 (+) True AMCG00009818
AMCG00009820 mRNA downstream 455027 688899 ~ 702109 (+) True AMCG00009820
AMCG00009819 mRNA downstream 514157 748029 ~ 749679 (+) True AMCG00009819
AMCG00009823 mRNA downstream 551653 785525 ~ 788379 (+) True AMCG00009823
AMCG00009822 mRNA downstream 582352 816224 ~ 820264 (+) True AMCG00009822
TU94510 other downstream 633808 867680 ~ 871735 (+) False AMCG00009821
TU94585 other downstream 803334 1037206 ~ 1037442 (+) True G75745
TU94657 other downstream 1088746 1322618 ~ 1327564 (+) False AMCG00009844
TU94663 other downstream 1100095 1333967 ~ 1335050 (+) True G75807
TU94664 other downstream 1126664 1360536 ~ 1363834 (+) True AMCG00009851

Expression Profile