RNA id: AMCG00009818


Basic Information

Item Value
RNA id AMCG00009818
length 1965
RNA type mRNA
GC content 0.52
exon number 19
gene id AMCG00009818
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 632394 ~ 654167 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgcttgttttttttttctctacagatGGGGAGAACACCTCAGATGATACCCCGATAATCGCAGTAACGGTGGCTCTGTCCTCTCTGCTGGTTATTGTGTTCATCATTATTGTGCTGTACATGCTCAGGTTTAAAAAGTACAAGCAGGCTGGAATCCACTCAAATTCCTTCAGATTGCCCAATGGGAGAGCAGATGACACAgAGCTCCAGAGTATGCCGCTATTGGCTCGTTCCCCCAGTACTAACAGGAAATATCCGCCCATCCCTGTGGATaagctggaggaggagatcAACCGTCGTATGGCCGATGACAACAAGCTATTCAGAGAAGAATTCAATGCCCTGCCAGTGTGTCCTATCCAGGCCTCCTGTGATGCTGCATCTAAAGAGGAGAATAAGGAGAAGAACAGATATGTCAACATCCTGCCTTATGACCACTCACGCGTCCACCTCACATCACTAGAGGGTGTCCCAGACTCAGACTTCATCAATGCCTCCTACATCAACGGATACCAGGAGAAGAACAAGTTCATCGCAGCACAAGggccaAAGGAAGAGACAGTAAATGATTTCTGGAGGATGATCTGGGAGCAGAACACTGCCACCATTGTCATGGTGACCAACTTGAAGGAGCGCAAAGAGtgtaAGTGTGCTCAGTACTGGCCTGATCAGGGTTGCTGGACCTATGGCAGTATACGTGTGTCAGTGGAGGACATGATGGTTCTGGTGGACTACACCATCCGCAAGTTCTGCATCCAGCAGGTGGGTGATGTGTCAGGGAAGAAACCACAGCGTCTGGTCACTCAATTCCACTTTACCAGCTGGCCGGACTTCGGCGTGCCCTTTACCCCCATTGGCATGCTCAAGTTCCTCAAGAAGGTCAAGACCTGCAACCCACAATACGCGGGTCCCATCGTGGTACACTGCAGTGCGGGAGTGGGCCGGACAGGGACGTTCATGGTGATTGACGCGATGCTGGACATGATGGCAGCAGAGAAGAAGGTGGACGTGTTCGGCTTGGTGACGCGCATCAGAGCCCAGCGCTGCCAGATGGTGCAGACTGACATGCAGTACGTGTTTATTTACCAGGCTCTGCTGGAGCACTACCTGTATGGTGACACAGAGCTGGAGGTCACCTCTCTAGAGACGCACCTTTCCAAGCTGTACTCGCACCCCCCCAGCTCAGGCTGCAACGGCCTGGAAGCAGAGTTCAAGAAGCTTACCTCCATCAAGATCCAGAACGATAAGATGAGGACGGGGAACCTGCCAGCCAACATGAAGAAGAACAGAGTGCTGCAAATCATACCCTatgagTTTAACAGAGTGATAATTCCAgtgaagagaggagaggagaacaCAGACTACGTCAACGCATCCTTCATTGATgGCTACAGACAGAAAGACTCATACATTGCGAGCCAGGGCCCCCTGCAGCACACCATTGAGGACTTCTGGAGGATGGTGTGGGAGTGGAAGAGCTGCTCCATTGTCATGTTGACTGAGCTGGAGGAGagaggacagGAGAAGTGTGCGCAGTATTGGCCGAGCGATGGCTGCCTGCTATGTGGTGACGTGGCCATTGAGCtgaagagggaggaggagaatgAGAGCTACACTGTGAGGGATTTGCTGGTCACCAACAACAGGgAGAACAAAGCTCGGCAGGTGCGTCAGTTTCATTTCCATGGCTGGCCAGAAGTGGGCATCCCTGCAGATGGTAAGGGTATGATCAACCTGATTGCAGCCGtacagaaacagcagcagcagtctggCAACCACCCCATCATTGTGCATTGCAGTGCGGGAGCTGGGCGGACAGGAACGTTCTGTGCTCTGAGCACAGTGCTGGAGCGAGTGAAGGCTGAAGGAATCCTGGATGTTTTTCAGACTGAACAGTACGAGTTCTGTTACAAGGTGGTCCAGGAATACATTGACGCCTTCTCTGACTACGCCAACTTCAAATAG

Function

GO:

id name namespace
GO:0045859 regulation of protein kinase activity biological_process
GO:0006470 protein dephosphorylation biological_process
GO:0060027 convergent extension involved in gastrulation biological_process
GO:0060041 retina development in camera-type eye biological_process
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG:

id description
K18032 PTPRA; receptor-type tyrosine-protein phosphatase A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU94403 lncRNA upstream 23619 586864 ~ 608775 (+) True G75600
TU94366 lncRNA upstream 312495 304793 ~ 319899 (+) True G75572
TU94349 lncRNA upstream 525349 106073 ~ 107045 (+) True G75556
TU94314 lncRNA upstream 534365 91458 ~ 98029 (+) True G75528
TU94316 lncRNA upstream 540611 47559 ~ 91783 (+) False G75528
TU94449 lncRNA downstream 86312 740479 ~ 741030 (+) True G75642
TU94451 lncRNA downstream 88718 742885 ~ 746072 (+) True G75644
TU94559 lncRNA downstream 330429 984596 ~ 995847 (+) False AMCG00009838
TU94583 lncRNA downstream 377299 1031466 ~ 1031717 (+) True G75743
TU94618 lncRNA downstream 516539 1170706 ~ 1174954 (+) True G75767
AMCG00009815 mRNA upstream 398522 232034 ~ 233872 (+) True AMCG00009815
AMCG00009810 mRNA upstream 510346 108684 ~ 122048 (+) True AMCG00009810
AMCG00009813 mRNA upstream 524804 107233 ~ 107590 (+) True AMCG00009813
AMCG00009820 mRNA downstream 34732 688899 ~ 702109 (+) True AMCG00009820
AMCG00009819 mRNA downstream 93862 748029 ~ 749679 (+) True AMCG00009819
AMCG00009823 mRNA downstream 131358 785525 ~ 788379 (+) True AMCG00009823
AMCG00009822 mRNA downstream 162057 816224 ~ 820264 (+) True AMCG00009822
AMCG00009825 mRNA downstream 197279 851446 ~ 859676 (+) True AMCG00009825
TU94510 other downstream 213513 867680 ~ 871735 (+) False AMCG00009821
TU94585 other downstream 383039 1037206 ~ 1037442 (+) True G75745
TU94657 other downstream 668451 1322618 ~ 1327564 (+) False AMCG00009844
TU94663 other downstream 679800 1333967 ~ 1335050 (+) True G75807
TU94664 other downstream 706369 1360536 ~ 1363834 (+) True AMCG00009851

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00037362 True 2562 mRNA 0.51 20 NC_007132.7 15790366 ~ 15815544 (+)
grasscarp (Ctenopharyngodon idella) CI01000006_10096004_10116009.mRNA True 2571 mRNA 0.51 20 CI01000006 10095884 ~ 10116009 (-)