RNA id: TU94510



Basic Information


Item Value
RNA id TU94510
length 798
RNA type TUCP
GC content 0.62
exon number 3
gene id AMCG00009821
representative False

Chromosome Information


Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 867680 ~ 877258 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


TCATTCTCACTTCACTCACCACTGCGTGACAGCCTGTGTGTGCACATTGGATCTGCGACTGAACATGTGATTCATGTCTCCACCTGCTGGCTGGCCTTTGACCCCTGGTTGTTGTTGCCATGGCGAAGCTGGAGGCAGTGCCGTTGCTGAGTGactgcccccccctccctggCCGGCAAGGCAGCATGGGCAGTGTGGGCAGTGGGGTGGCAGGGGAGCAGGAGTTCGCCATGAAAAGTGTGGGTACCCGCACCCAGCCAGGCACTACTCGGCCTAATGGCCTGCCCTCTCGCCGTTGCCCTGCAGAGGACCGCAGCCACAGCAACCCCGCCATCCACACAACACCCACCACCACtgccagctcctcctcctccacccccccccaacctGTGGGCAATGCACTGTACTTGAGTGGGGAGCTACGGCGGGCAGGGCAGCGTGGCCTCAGCCTGGATCTCTGTGGGAACAACGTGGCTGCCAACAATGAGAGGAATAGTAATGTTGGGGGTGTGGGGAGTAGTACAGGCAGCCTGCCCCCACCCCAGTACAGAGACCCCCCAAGTGCCAGCCTTGCCCCCTCCAGCTCAGGCCCAACCTCACTGGACAACCACAACCCACCCAAGATCCTCCCCGTGTCCGGCAAGCTGGAGCAGaATAATGATGGATTGGTTCGTCCCTCAGCGTTCAAGCCTGTGGTTCCCAAGAGTTTCCATTCCATGCAGAACCTTGTGTGCCCCCCCCAGACCAACGGGGGCCGGAGTGTGGGGGGTGGTGGCAGTGGTGGCAGCTCAGGCTCAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU94451 lncRNA upstream 121608 742885 ~ 746072 (+) True G75644
TU94449 lncRNA upstream 126650 740479 ~ 741030 (+) True G75642
TU94403 lncRNA upstream 258905 586864 ~ 608775 (+) True G75600
TU94366 lncRNA upstream 547781 304793 ~ 319899 (+) True G75572
TU94349 lncRNA upstream 760635 106073 ~ 107045 (+) True G75556
TU94559 lncRNA downstream 112861 984596 ~ 995847 (+) False AMCG00009838
TU94583 lncRNA downstream 159731 1031466 ~ 1031717 (+) True G75743
TU94618 lncRNA downstream 298971 1170706 ~ 1174954 (+) True G75767
TU94640 lncRNA downstream 395124 1266859 ~ 1280227 (+) False AMCG00009846
TU94641 lncRNA downstream 395124 1266859 ~ 1273549 (+) False AMCG00009846
AMCG00009825 mRNA upstream 8004 851446 ~ 859676 (+) True AMCG00009825
AMCG00009822 mRNA upstream 47416 816224 ~ 820264 (+) True AMCG00009822
AMCG00009823 mRNA upstream 79301 785525 ~ 788379 (+) True AMCG00009823
AMCG00009819 mRNA upstream 118001 748029 ~ 749679 (+) True AMCG00009819
AMCG00009820 mRNA upstream 165571 688899 ~ 702109 (+) True AMCG00009820
AMCG00009824 mRNA downstream 11678 883413 ~ 885911 (+) True AMCG00009824
AMCG00009836 mRNA downstream 26543 898278 ~ 902332 (+) True AMCG00009836
AMCG00009843 mRNA downstream 49153 920888 ~ 922685 (+) True AMCG00009843
AMCG00009841 mRNA downstream 77394 949129 ~ 949689 (+) True AMCG00009841
AMCG00009842 mRNA downstream 90271 962006 ~ 974452 (+) True AMCG00009842
TU94585 other downstream 165471 1037206 ~ 1037442 (+) True G75745
TU94657 other downstream 450883 1322618 ~ 1327564 (+) False AMCG00009844
TU94663 other downstream 462232 1333967 ~ 1335050 (+) True G75807
TU94664 other downstream 488801 1360536 ~ 1363834 (+) True AMCG00009851
TU96625 other downstream 10277891 11149626 ~ 11155469 (+) True G77423

Expression Profile