RNA id: TU94559


Basic Information

Item Value
RNA id TU94559
length 896
lncRNA type sense_over
GC content 0.42
exon number 7
gene id AMCG00009838
representative False

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 984596 ~ 995847 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTAGAGCACCCCTGCAAAGTAGCCATAGAACAGACAGAATAAGGGCGAGCTGGAGCTCAGTGTTAGCACTTGCAGTACTCTTACTGCAGTTGAACTGAGCGGCTGCTGTGAGCTTGAAGAGGACAAGAAGACATGGGCTGTCTGGGATTTCTCTGGGCATTGTGCTTATGGACAACAGAGAGGCGTCCAACTCAGCCCCCGCCCACCATACCCCCCGAGAAGCCCAAACCTTGCCGCTGCATTAACAGACCCAGCACACGGCCCAAGCAAGGGAAGACCTGTGAAGCTCAGGTACTATGGTCCTTGGTTGGAGGAGTTCTGGGCTTGACAGTAGTTTTAATCTGCACCCTGTACTATTTCAGCAGGCTGCCTAAGAAATGCCGTCACAGACTTATCAAGAAACAACAGCTGCGCTGAAGTGAAGTGGCTTTGGCAAAGAACACCACAAATGTGAAGTTCCCTCTGTCTCCAGACTCTCTTCTGCACCTACACCAGGCTGTTTCAGGAGACTCAACTGACACAGAtaatggagaaagagagagcggcAGAGAGAAATTCACTAGTAGCGCAGCCTACCAAATATCCAACTCACAATTATTTAGACTTTTGCTTTTCAGGAAgtactaatatatatttcttgggaatataatgcatttgtttctgtaatttttattttacgaATATGtagatatttaacaaaatgtatactcAAAAGTTTCACATATACtggatatatatgttttcttatGCTGCAGTCTGCatgatttatatgttttattattgtcctCAAGCatttgaatgtgtaaaaagatttatgtttgtttttcaccaatttctttgcaaatatttCAGGCATTATAAAACTCACTgcttcaataaaatattaaaaagggtaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU94451 lncRNA upstream 238524 742885 ~ 746072 (+) True G75644
TU94449 lncRNA upstream 243566 740479 ~ 741030 (+) True G75642
TU94403 lncRNA upstream 375821 586864 ~ 608775 (+) True G75600
TU94366 lncRNA upstream 664697 304793 ~ 319899 (+) True G75572
TU94349 lncRNA upstream 877551 106073 ~ 107045 (+) True G75556
TU94583 lncRNA downstream 35619 1031466 ~ 1031717 (+) True G75743
TU94618 lncRNA downstream 174859 1170706 ~ 1174954 (+) True G75767
TU94640 lncRNA downstream 271012 1266859 ~ 1280227 (+) False AMCG00009846
TU94641 lncRNA downstream 271012 1266859 ~ 1273549 (+) False AMCG00009846
TU94681 lncRNA downstream 402311 1398158 ~ 1399008 (+) True G75817
AMCG00009842 mRNA upstream 10144 962006 ~ 974452 (+) True AMCG00009842
AMCG00009841 mRNA upstream 34907 949129 ~ 949689 (+) True AMCG00009841
AMCG00009843 mRNA upstream 61911 920888 ~ 922685 (+) True AMCG00009843
AMCG00009836 mRNA upstream 82264 898278 ~ 902332 (+) True AMCG00009836
AMCG00009824 mRNA upstream 98685 883413 ~ 885911 (+) True AMCG00009824
AMCG00009837 mRNA downstream 18227 1014074 ~ 1021414 (+) True AMCG00009837
AMCG00009840 mRNA downstream 201783 1197630 ~ 1223449 (+) True AMCG00009840
AMCG00009839 mRNA downstream 238909 1234756 ~ 1245100 (+) True AMCG00009839
AMCG00009846 mRNA downstream 271038 1266885 ~ 1298242 (+) True AMCG00009846
AMCG00009845 mRNA downstream 313878 1309725 ~ 1313842 (+) True AMCG00009845
TU94510 other upstream 112861 867680 ~ 871735 (+) False AMCG00009821
TU94585 other downstream 41359 1037206 ~ 1037442 (+) True G75745
TU94657 other downstream 326771 1322618 ~ 1327564 (+) False AMCG00009844
TU94663 other downstream 338120 1333967 ~ 1335050 (+) True G75807
TU94664 other downstream 364689 1360536 ~ 1363834 (+) True AMCG00009851
TU96625 other downstream 10153779 11149626 ~ 11155469 (+) True G77423

Expression Profile