RNA id: AMCG00009839



Basic Information


Item Value
RNA id AMCG00009839
length 1050
RNA type mRNA
GC content 0.52
exon number 3
gene id AMCG00009839
representative True

Chromosome Information


Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 1234756 ~ 1245100 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGGCCTATGTGCATTCCTCCTTTGCTGTGGCAACGCCTAGCCTAGCTGAGTGCAAGAAGAGGCTGGAGAGGGGAACGTGGAGAAGGCTGGTCTTGTTCTGCTGTGCCATGGCTGGATTTATCTACTTCCTGAAGGCGCAACTGCACCAGAGAGCAGCAGGGGAGAAGCCTTTTGTTACCTATCTGTCCACAGCGAGTGGGAAAAAGGTGGATCCCCTCATCAATGTGACATCCTGGGGTGCCCCTATTGTGTGGGGAGATAGAGAGGAGTCCCAGCTGAGGAGAATGGAGTTCGCGGACAAGGGGGTCACCACAGGCCTGGCAGTGTTTGTCATTGGGAAGTATTCCCACTACCTACAGAAGTTCATTGTCTCAGCAGAGAGGTACTTTCTGGAAGGACAGGCTGTGACCTACTACATACTAACAGACAACCTGCGAGGGATCCCCAATCTAAGCTTGAGGACCGGTCGTAAGCTCAAGGCCTTATATATTGCAGAAAGGCCAGAGTGGGTCCACCTCTCCAGGACGAGAATGTCCCTGCTGAGTAGCAGCATCAAGGAGTTCATCAAGAATGAGGTGGATTACCTCTTCTGCATGGACGTCGACCAAGTCTTCATCAACCGGGTGGGGGCTGAGATTCTAGGGGACCTGGTGGCCACCTTCCACCCAGTGTACTTCAACAGGCCCCACTATACATTTCCATATGAGACTACGCTGGACTCCAAGGCCTATGTGGAAGACTCAGAAGGGGATTACTACTACACCTCTGAGCTCTATGGTGGTTTGTGCTCTGAGATTTATGAGCTAGCCTTGCTTTGTTCCCAGTTCATCATCCAGGATATGGAGATGAGTTATCATGCTTTCTTGTTCGAGGAGAGCTACCTTAACCGCTTCTTCATCAACAAGAGGCCCAGCAGAATCCTCTCCCCAGAGTACAGCTGGTGGGATGCCCCAGAGACATCAAACATTCAAGTGAAAAGGATCCTCTCACTGCAGAGGGGCTGCTTCCAGGACTCTGAGTCTAAGGGTGCCAACTGCTATAGCACTTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU94618 lncRNA upstream 59802 1170706 ~ 1174954 (+) True G75767
TU94583 lncRNA upstream 203039 1031466 ~ 1031717 (+) True G75743
TU94559 lncRNA upstream 238909 984596 ~ 995847 (+) False AMCG00009838
TU94451 lncRNA upstream 488684 742885 ~ 746072 (+) True G75644
TU94449 lncRNA upstream 493726 740479 ~ 741030 (+) True G75642
TU94640 lncRNA downstream 21759 1266859 ~ 1280227 (+) False AMCG00009846
TU94641 lncRNA downstream 21759 1266859 ~ 1273549 (+) False AMCG00009846
TU94681 lncRNA downstream 153058 1398158 ~ 1399008 (+) True G75817
TU94684 lncRNA downstream 164080 1409180 ~ 1414030 (+) False AMCG00009852
TU94689 lncRNA downstream 164080 1409180 ~ 1423122 (+) False AMCG00009852
AMCG00009840 mRNA upstream 11307 1197630 ~ 1223449 (+) True AMCG00009840
AMCG00009837 mRNA upstream 213342 1014074 ~ 1021414 (+) True AMCG00009837
AMCG00009838 mRNA upstream 238923 985342 ~ 995833 (+) True AMCG00009838
AMCG00009842 mRNA upstream 260304 962006 ~ 974452 (+) True AMCG00009842
AMCG00009841 mRNA upstream 285067 949129 ~ 949689 (+) True AMCG00009841
AMCG00009846 mRNA downstream 21785 1266885 ~ 1298242 (+) True AMCG00009846
AMCG00009845 mRNA downstream 64625 1309725 ~ 1313842 (+) True AMCG00009845
AMCG00009844 mRNA downstream 77522 1322622 ~ 1327593 (+) True AMCG00009844
AMCG00009851 mRNA downstream 115484 1360584 ~ 1368815 (+) False AMCG00009851
AMCG00009852 mRNA downstream 167464 1412564 ~ 1413371 (+) False AMCG00009852
TU94585 other upstream 197314 1037206 ~ 1037442 (+) True G75745
TU94510 other upstream 363021 867680 ~ 871735 (+) False AMCG00009821
TU94657 other downstream 77518 1322618 ~ 1327564 (+) False AMCG00009844
TU94663 other downstream 88867 1333967 ~ 1335050 (+) True G75807
TU94664 other downstream 115436 1360536 ~ 1363834 (+) True AMCG00009851
TU96625 other downstream 9904526 11149626 ~ 11155469 (+) True G77423
TU96770 other downstream 10455606 11700706 ~ 11701081 (+) True G77541

Expression Profile