RNA id: AMCG00009844


Basic Information

Item Value
RNA id AMCG00009844
length 1291
RNA type mRNA
GC content 0.46
exon number 3
gene id AMCG00009844
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 1322618 ~ 1327593 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GACCCTCGGCGTCCAAGACGCTCTGTCGTCCCTGCAGCTCTGCTTCGGCTCAGCAATGGCGCAGGAGTTCGTGTCCGCTCGGATCAAAGGCGATAAAGTGGTTCTTTTCATGAAGCCCACTTGCACCTACTGCATCCTGGCTAAGGACGTGCTGTCCAAGTACAAATTTAAGAAAGCCCACCTGGAGCTCGTCGACATCAGTGAACGGACGGACATGGGCTGCATCATGGACTACTTTCTGCAGAAGACTGGCGCTCGCACCGTGCCCCGTGTGTTCATTGGCAAGGAATGCATTGGAGGGGGGAGTGACGTGGCTGAGTTGGATAAGAGTGGCGAGCTGGAGGGCATGCTGCAGGCCATTGGGGCACTTCAATGACTGATTGCTAGCTGGGGGTCCCAGTCACAGAAGTGTGCAGTACAGGAACAGGaagtcatctctctctctgaagatCAGAAAGTTACTGGCGATGAAATGAAGGAGCCAGGTGGCTAACTGTTGTGAGTTGTGCTGCTAAGgagcacagaaaacaaagccGCAAATCAACCAATATGACAAGTTTAACTGTTCGGTAGGAAATATAGAATCTTGATACAGCCTGATTTTATGCAGTTGCCCTTCTGCAATTCACTATGCAGAAAATACTAATTGGAAACAAGGATTTGCCATCAATGAAAATCACAGCACATAATGCCTCTTTACCAGCACGTATTTGTTCTTTTCATGATGTTATTTTGCATGTACATTTCCATTCATATAGCAACTTCATGATAATTTGTTATAGTATTGACCTTGTGTTATAACATTACCGCAATATGGAAATCATGTTATTATATGTAGCATATACTGCTACATATTGCATACAATACCGCCAATATATTTTCCTAAATATTTCTACAATCCCCCCTCACCCAATCCCCATCCGTTTCTCTCTCACCTGGGCCCTCCTGAGAAGGGTGACTATATTTAGGCTGGTGGTGAGCAGCTTCCTGCTGGGCATGCTCTCCAGGTACTTGCACACAGACACCTCACACAAGTGCTGCAAGCGGGTCAGCTAGTACATATCCACAAACACCAATAAAGACATGGCCTGCTGGAGACTATCTGCGGGGGGGGTGGAATCAGGAGGCAGGAGAGTTGGCCAGGTTTTTTTCTACCATTGCTTCTGTAACACTTTTAAAACCAATCTTGTGAAAAACTACTGCTAAGTGTTTAATGCCGATCTTGTTTGCATGTGTAGAGGAATTGCTTTAAGGAActccttacattttaaataaattgatattaccaaaa

Function

GO: NA

KEGG:

id description
K03676 grxC, GLRX, GLRX2; glutaredoxin 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU94640 lncRNA upstream 42395 1266859 ~ 1280227 (+) False AMCG00009846
TU94641 lncRNA upstream 49073 1266859 ~ 1273549 (+) False AMCG00009846
TU94618 lncRNA upstream 147668 1170706 ~ 1174954 (+) True G75767
TU94583 lncRNA upstream 290905 1031466 ~ 1031717 (+) True G75743
TU94559 lncRNA upstream 326775 984596 ~ 995847 (+) False AMCG00009838
TU94681 lncRNA downstream 70565 1398158 ~ 1399008 (+) True G75817
TU94684 lncRNA downstream 81587 1409180 ~ 1414030 (+) False AMCG00009852
TU94689 lncRNA downstream 81587 1409180 ~ 1423122 (+) False AMCG00009852
TU94685 lncRNA downstream 84707 1412300 ~ 1423122 (+) True AMCG00009852
TU94686 lncRNA downstream 84707 1412300 ~ 1423122 (+) False AMCG00009852
AMCG00009845 mRNA upstream 8780 1309725 ~ 1313842 (+) True AMCG00009845
AMCG00009846 mRNA upstream 24380 1266885 ~ 1298242 (+) True AMCG00009846
AMCG00009839 mRNA upstream 77522 1234756 ~ 1245100 (+) True AMCG00009839
AMCG00009840 mRNA upstream 99173 1197630 ~ 1223449 (+) True AMCG00009840
AMCG00009837 mRNA upstream 301208 1014074 ~ 1021414 (+) True AMCG00009837
AMCG00009851 mRNA downstream 32991 1360584 ~ 1368815 (+) False AMCG00009851
AMCG00009852 mRNA downstream 84971 1412564 ~ 1413371 (+) False AMCG00009852
AMCG00009850 mRNA downstream 102341 1429934 ~ 1485095 (+) True AMCG00009850
AMCG00009854 mRNA downstream 183826 1511419 ~ 1511967 (+) True AMCG00009854
AMCG00009856 mRNA downstream 259705 1587298 ~ 1593804 (+) True AMCG00009856
TU94585 other upstream 285180 1037206 ~ 1037442 (+) True G75745
TU94510 other upstream 450887 867680 ~ 871735 (+) False AMCG00009821
TU94663 other downstream 6374 1333967 ~ 1335050 (+) True G75807
TU94664 other downstream 32943 1360536 ~ 1363834 (+) True AMCG00009851
TU96625 other downstream 9822033 11149626 ~ 11155469 (+) True G77423
TU96770 other downstream 10373113 11700706 ~ 11701081 (+) True G77541
TU97434 other downstream 14313368 15640961 ~ 15642841 (+) False AMCG00010119

Expression Profile