RNA id: TU94657


Basic Information

Item Value
RNA id TU94657
length 1266
RNA type TUCP
GC content 0.46
exon number 3
gene id AMCG00009844
representative False

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 1322618 ~ 1327593 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AATTGACCCTCGGCGTCCAAGACGCTCTGTCGTCCCTGCAGCTCTGCTTCGGCTCAGCAATGGCGCAGGAGTTCGTGTCCGCTCGGATCAAAGGCGATAAAGTGGTTCTTTTCATGAAGCCCACTTGCACCTACTGCATCCTGGCTAAGGACGTGCTGTCCAAGTACAAATTTAAGAAAGCCCACCTGGAGCTCGTCGACATCAGTGAACGGACGGACATGGGCTGCATCATGGACTACTTTCTGCAGAAGACTGGCGCTCGCACCGTGCCCCGTGTGTTCATTGGCAAGGAATGCATTGGAGGGGGGAGTGACGTGGCTGAGTTGGATAAGAGTGGCGAGCTGGAGGGCATGCTGCAGGCCATTGGGGCACTTCAATGACTGATTGCTAGCTGGGGGTCCCAGTCACAGAAGTGTGCAGTACAGGAACAGGaagtcatctctctctctgaagatCAGAAAGTTACTGGCGATGAAATGAAGGAGCCAGGTGGCTAACTGTTGTGAGTTGTGCTGCTAAGgagcacagaaaacaaagccGCAAATCAACCAATATGACAAGTTTAACTGTTCGGTAGGAAATATAGAATCTTGATACAGCCTGATTTTATGCAGTTGCCCTTCTGCAATTCACTATGCAGAAAATACTAATTGGAAACAAGGATTTGCCATCAATGAAAATCACAGCACATAATGCCTCTTTACCAGCACGTATTTGTTCTTTTCATGATGTTATTTTGCATGTACATTTCCATTCATATAGCAACTTCATGATAATTTGTTATAGTATTGACCTTGTGTTATAACATTACCGCAATATGGAAATCATGTTATTATATGTAGCATATACTGCTACATATTGCATACAATACCGCCAATATATTTTCCTAAATATTTCTACAATCCCCCCTCACCCAATCCCCATCCGTTTCTCTCTCACCTGGGCCCTCCTGAGAAGGGTGACTATATTTAGGCTGGTGGTGAGCAGCTTCCTGCTGGGCATGCTCTCCAGGTACTTGCACACAGACACCTCACACAAGTGCTGCAAGCGGGTCAGCTAGTACATATCCACAAACACCAATAAAGACATGGCCTGCTGGAGACTATCTGCGGGGGGGGTGGAATCAGGAGGCAGGAGAGTTGGCCAGGTTTTTTTCTACCATTGCTTCTGTAACACTTTTAAAACCAATCTTGTGAAAAACTACTGCTAAGTGTTTAATGCCGATCTTGTTTGCATGTGTAGAGGAATTGCTTTAAGGAActcctt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU94640 lncRNA upstream 42391 1266859 ~ 1280227 (+) False AMCG00009846
TU94641 lncRNA upstream 49069 1266859 ~ 1273549 (+) False AMCG00009846
TU94618 lncRNA upstream 147664 1170706 ~ 1174954 (+) True G75767
TU94583 lncRNA upstream 290901 1031466 ~ 1031717 (+) True G75743
TU94559 lncRNA upstream 326771 984596 ~ 995847 (+) False AMCG00009838
TU94681 lncRNA downstream 70594 1398158 ~ 1399008 (+) True G75817
TU94684 lncRNA downstream 81616 1409180 ~ 1414030 (+) False AMCG00009852
TU94689 lncRNA downstream 81616 1409180 ~ 1423122 (+) False AMCG00009852
TU94685 lncRNA downstream 84736 1412300 ~ 1423122 (+) True AMCG00009852
TU94686 lncRNA downstream 84736 1412300 ~ 1423122 (+) False AMCG00009852
AMCG00009845 mRNA upstream 8776 1309725 ~ 1313842 (+) True AMCG00009845
AMCG00009846 mRNA upstream 24376 1266885 ~ 1298242 (+) True AMCG00009846
AMCG00009839 mRNA upstream 77518 1234756 ~ 1245100 (+) True AMCG00009839
AMCG00009840 mRNA upstream 99169 1197630 ~ 1223449 (+) True AMCG00009840
AMCG00009837 mRNA upstream 301204 1014074 ~ 1021414 (+) True AMCG00009837
AMCG00009851 mRNA downstream 33020 1360584 ~ 1368815 (+) False AMCG00009851
AMCG00009852 mRNA downstream 85000 1412564 ~ 1413371 (+) False AMCG00009852
AMCG00009850 mRNA downstream 102370 1429934 ~ 1485095 (+) True AMCG00009850
AMCG00009854 mRNA downstream 183855 1511419 ~ 1511967 (+) True AMCG00009854
AMCG00009856 mRNA downstream 259734 1587298 ~ 1593804 (+) True AMCG00009856
TU94585 other upstream 285176 1037206 ~ 1037442 (+) True G75745
TU94510 other upstream 450883 867680 ~ 871735 (+) False AMCG00009821
TU94663 other downstream 6403 1333967 ~ 1335050 (+) True G75807
TU94664 other downstream 32972 1360536 ~ 1363834 (+) True AMCG00009851
TU96625 other downstream 9822062 11149626 ~ 11155469 (+) True G77423
TU96770 other downstream 10373142 11700706 ~ 11701081 (+) True G77541
TU97434 other downstream 14313397 15640961 ~ 15642841 (+) False AMCG00010119

Expression Profile