RNA id: AMCG00009846


Basic Information

Item Value
RNA id AMCG00009846
length 1437
RNA type mRNA
GC content 0.54
exon number 8
gene id AMCG00009846
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 1266859 ~ 1298242 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCGGCGCTGAGTGAGGATGGAAGGTACGGGCTGTCGTGTGGGAGACGGAAAGCCAGCAGGACCACGGCTTTCCACGTCAAGTTAACCGAGACAGCATTCAGGGCGCTGGAAAACTACCAAAACTGCAAGAGGGGCCAGTTCAAGCGCATTAAAATTCCAAGAATAGATGCTCCTGCTGACCTGCGAaactttgatttttatttgtccAACGTGGGCAAAGACAACCCTCAGGGAAGTTTCGACTGCATTCACCAGTATACGTCAAGCTATGGAGTCTCTCAGCTGGACTCTCTAGGTACAGTGCAAGATAAAATCACGGTGTGTGCTACCAATGACTCCTATCAGATGACGCGCGAGAGGATGACGCAAGCTGAGGAGGAGAAGAGCAGCCGTAGGAAGAGGGTTCAGATACGGAAGCCGGCCCCCTCAGCCCCTGATCCTGTGCCCGAGAGGAAACGTTCAACACCAATTAACCCAGCCAACACCATACGCAAGTGCAATACGAACAACCCTGTGGGTCAGAAGCCGTACAGGGATAGAGTAATCCACTTACTGGCACTTAAGCCCTACAAGAAGCCAGAGGTCTTGGCTCGCTTGCAAAGGGATGGCGTTAATCAGAAGGACAGGAACTCACTGGGACCAACGCTGCAGCAGGTTGCAAATCTTAATTCAAAGGACAACTCTTACACACTGAAGGAATACATGTATAAAGAGATCCAGAAGGACTGGCCTGGCTATTCGCAAGAGGACAGGCTGCTGCTGGAGCGCATACTAGCTCGCAGCCAGTCAGAATCTCTCCTAACAAGTCCACCAAAGGAGCCCATTTCTGGATCTCCTCGGAAGCGGACTGTAGACTTTGACTTCATTGACCCTCTCATGCCCAAGAAGACCCGTATCTCGCACCTCACCAACCGTGTCCTGCCAACCCCAAATGACTACCTGCCTCTTTCTAACGAAGAGAAATCAGCCCCTCCTGCTCCACCTCCATCTGCTGCCTCTGCTGTTGCCTGCCCTTGCCCCCTGCCACTACCCCCACCAACCCATCTCCCCGTGTCCCACCCCCCTGTGCCCACCAGCTCCAATTCCAACTCCCCAAGCACACCAGAGGGCCGTGGCACGCAGGACTTGCCCGGGGATGGCTTTAGCCGCAACCAGATCTCTTTGGAGGACCAGCCGGAGAAGTACACATCTCGGACTGCATCGGAGGTTCCCGTCCCTGCCTCTGACTGCACCAAGCAGACTCCCCCCTTGGTGTTGGGCTATGGCCCCAAGAGCAGCAAGAAAcccaaaaataaatccaaaaaaCACAAGGAGAAGGAGCGGGAGGACCGGCACGAGGCTGAACAGGTTGAGGAAATCCCTAGGAAAAAGCAGCGTCTGGAGAGTGGTGGAGGCACACCCAGGATACAGAAAACGCCGAGCTCTGACAAAGAA

Function

GO: NA

KEGG:

id description
K15183 ELL; RNA polymerase II elongation factor ELL

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU94618 lncRNA upstream 91931 1170706 ~ 1174954 (+) True G75767
TU94583 lncRNA upstream 235168 1031466 ~ 1031717 (+) True G75743
TU94559 lncRNA upstream 271038 984596 ~ 995847 (+) False AMCG00009838
TU94451 lncRNA upstream 520813 742885 ~ 746072 (+) True G75644
TU94449 lncRNA upstream 525855 740479 ~ 741030 (+) True G75642
TU94681 lncRNA downstream 99916 1398158 ~ 1399008 (+) True G75817
TU94684 lncRNA downstream 110938 1409180 ~ 1414030 (+) False AMCG00009852
TU94689 lncRNA downstream 110938 1409180 ~ 1423122 (+) False AMCG00009852
TU94685 lncRNA downstream 114058 1412300 ~ 1423122 (+) True AMCG00009852
TU94686 lncRNA downstream 114058 1412300 ~ 1423122 (+) False AMCG00009852
AMCG00009839 mRNA upstream 21785 1234756 ~ 1245100 (+) True AMCG00009839
AMCG00009840 mRNA upstream 43436 1197630 ~ 1223449 (+) True AMCG00009840
AMCG00009837 mRNA upstream 245471 1014074 ~ 1021414 (+) True AMCG00009837
AMCG00009838 mRNA upstream 271052 985342 ~ 995833 (+) True AMCG00009838
AMCG00009842 mRNA upstream 292433 962006 ~ 974452 (+) True AMCG00009842
AMCG00009845 mRNA downstream 11483 1309725 ~ 1313842 (+) True AMCG00009845
AMCG00009844 mRNA downstream 24380 1322622 ~ 1327593 (+) True AMCG00009844
AMCG00009851 mRNA downstream 62342 1360584 ~ 1368815 (+) False AMCG00009851
AMCG00009852 mRNA downstream 114322 1412564 ~ 1413371 (+) False AMCG00009852
AMCG00009850 mRNA downstream 131692 1429934 ~ 1485095 (+) True AMCG00009850
TU94585 other upstream 229443 1037206 ~ 1037442 (+) True G75745
TU94510 other upstream 395150 867680 ~ 871735 (+) False AMCG00009821
TU94657 other downstream 24376 1322618 ~ 1327564 (+) False AMCG00009844
TU94663 other downstream 35725 1333967 ~ 1335050 (+) True G75807
TU94664 other downstream 62294 1360536 ~ 1363834 (+) True AMCG00009851
TU96625 other downstream 9851384 11149626 ~ 11155469 (+) True G77423
TU96770 other downstream 10402464 11700706 ~ 11701081 (+) True G77541

Expression Profile