RNA id: AMCG00009850


Basic Information

Item Value
RNA id AMCG00009850
length 5170
RNA type mRNA
GC content 0.50
exon number 40
gene id AMCG00009850
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 1429934 ~ 1485095 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CACCTTATTCCCGGGGTCAATGGTCAGGCGGCCATCCTCGTTGGATGCTGGGATTGAACTATTCCAGTTCAGACTgaagtaataaaataacagAAACCATGTCAAACAAAGAGGTGAAGTCTGCTTTGAAAAGTGCCAGGGaagccattaaaaacaaagaattcAAAGAAGCCCTAAAGCACTGCAAGGGTGTTTTGAAGCTTGAGAAGAACAACTACAATGCCTGGGTGTTTATCGGCGTGGCTGCAGCTGAGTTGGAGCAGCCAGAACAGTCACAGATTGCATACAAGAAGGCTACAGAGCTGGAGCCAGAGCAGTTGCTGGCATGGCAGGGGCTAGCAAACCTATATGAAAAAAGTAACAAGATGGATTTTAAAGCTGACTTGCAAAGGGTCTTCCAGAAACTTCTAACTCTGTACGAAAGTTCAGACAAATCAAAATGGTATGAGGTGGGCAGGAAGCTGGTGGAAATCTACCATAAGGAGAAGAATCACTTGGAGGTGGGCCGGGTGTGGCACAGACTGGTGCGCCTCAaggtggaggagggggtggaggtgCAGGAACTGAGGCAGTTGTGGGTTCGGCTGACCCAGCTGCTGAAAGACAGCGTGGAAGAGCAGGACAATGAAACACAGCAGCTGCTGATCATAGCTTTTGAAAATGCCATGAGTTTGATGAACAAGATTCCAAGTGAAGACCAtcaaaagctttcaaatgaatacattcaatgCTTATCAAGACTGCCCCATGAACAGATGAAGATGAGAGAGTCATGCAAGACTATGCAGTCTCTCTACCCAACCCTGATGTTTCCCCTAGAGATCCTCAGCCTGCATTTCATCCATACAGGTGTGTACAGTGAAGAGGCTTTGCAGTGTTTCACTAGATTAGTGGAGATGGACTCGAGCAGTGGCCCTGGACATGTTGGACTGGGGATCATAGCTTTCCAAGAGAAGAAATATGATGAGGCTGTCAAGAGTCTATCCCAGGGACTTAAACAGATTCGCACCAGTGCAAGTGGGTGGTATCACTTAGCACAAGCCCAGTTGAAAATGCACCAGTATCACAACTGCATTGTTTCCTGCATCCAAGAGGAGCAGTGGAAACAGAGGTTGCTGCGAATTAGGGTAGAAGCCCTGGTGAAGAGTGGGGGGGGATCCTGTGCAGAGGAGGCCTTGGACACCCTCTCACAGcTTTCTGATGCTGATAATGACCCTGTCCTGTTGGTTCTGAAGGGAACTATTTACCTGCAAAAAGGGCTTCTGGACCAGGCATATCAGGTGGCCACTGATCTTCTGGACTCGCACCCCCAGCTGGCAGAGGCCCACGCTCTGAAAGGCCACATCCACCTGGCCCAGGATCAGCACATACAGGCAGAGCAGAGCTTTCAGAAGGCGGTGGATAATGACCCATCCTCAGGGGAGTACTACTTCAACCTGGGGCAGCTGTACTGGAACATGGGGGAGGAGACCAGGCGGGACAAGAGCAAGGCACATACACACTTACTAAAGGCCGCCAAGCTGGACTCGAATCTTGGGCCTGTGTTCCGGGTGCTGGGATGTTTCTACAGAGAGGTGGTGCAAGAGCAAGGGCGAGCACGCGGCTGTTTTAAGAAGGCCTTTGATCTGGACAGCAGTGACACCGAGGCTGGGTCTGCAGCTGTTGACCTAAGCATGGAGCTTGGAGACATGGATTCTGCACTGACAATCCTGAGATCAGTGACAGAGCAGGCGAGTGCGGGTTCGGCAAAGTGGGCATGGCTCAGGAGAGGCCTATATTACCTGAAGATCAACCAGCACTCCCAGGCCATTGCAGATCTGCAGGCAGCGCTGAGGGCAGACCCAAAGGATTCGATCTGTTGGGAGTGCCTGGGAGAGGCCTACCTCAACAGGCGCAGTTTTACAGCAGCACTCAAGGCTTTCAGCAAAGCTAACTACCTAAACCCCCAGTCCATCTACAACCTTTACCAAATAGCAGCTATTAAGCAGACCCTGGGCAAATGCAAGGAGGCcacaaatgaatacatgcaAATCATCCAAAGGGAGGAATATGTGCCAGCACTTAaggGTCTAGGTGAGTGCTATCTTTCTATGGCCCAAAGTGCAATGAAGGATTACCTGGATGGAAGAGCGATGGACTTTATTGAAAAAGCCATCAAGTATCTCTTCAGAGCTGTGCAGTGCCGACCAGACCTGTCTTGCTTGTGGAAGCTGCTTGGGGATGTCTGCACTTCCATCCACTCTTTGGCCCCAGCCAGGGCCCAGGCCAGTGTGCCAGGCCTCCTCTGTGGACACAGCTCCAGTCCTAGAGAGACCCTACCGAAAGCTGACATCCTCCGGCTTGGGAGcagGTGCTACGCTCAAGCTCTTAAGCTGATGGCAGATTGTGCCAATTTGTGGAGTGATCTTGGACTAAACTATTACCATCAGGCCCAGCATTTGACAGCAGTGCacagtgagagtgagtgtgcaGAGCTCTTTGAGAAATCTTTGCAGtgTGTCAAAAAAGCTGTGATGCTGGACAGCAGAAACTATTTCTACTGGAATGTGCTGGGAGTGGTTGCCATGAGTAAAGgtatTGAAAACCTGGCCCTTGCCCAACACTCATTTATTAAATCAGTGAACATGGATGCAAATAATGTAGTAGCCTGGACTAACCTTGGGGTGTtgtatctgaaaaaagaaaacattgagCTCGCTCATGAAGCCTTCAAGGTGGCCCAGTCTCTTGAGCCTTTGTATGTAAATTGCTGGATTGGACAGgCTCTTATTGCAGAGTCTGTTGGGAGCTATGAAACAATGGATCTTTTCAGACACACTACAGAGCTGAGCACCCATATTGAAGGTGTGAATGGTTATGCCTACTGGGTGTGCTCTACACTGCTGGACAAGTCCAATAGGGATTCGGAGCTCTATCGCTACAACATCGTCCAGATGAATGCCATCTCGGCAGCCCAGGTCGCTCTGTGCAAATATACAGAGAGGGTTCAGACTGATGCTGCTGCTTTCTCCATGCTTGGGTACCTTAATGAACATCTACACCTGAAGTTACAGGCCACACAGGCCTACCAGAGCAATACAGGTCAGTATGAGAAAGCAGTCAAGGCCTACTCCTCCATACCACTGACTGATCTGCATGACCTCACTGGGCTGGCACTGGCGTActtcaggagcagtcgcttacAGGACAGCATCTTGGCATATGAGAAAGCCCTGAAAGTCGCGTCCAGTGAGAAGGAGAAGGCGTACATCCTGACTGCCCTGGCTCTGCTGCAACACCGGCAGAACAATATGGACAGCGCCAAGACCCTGCTCTTCAAATGCTCTGTGCTGAAGGAGCCCTGCACAGAGAgcctgctgtgtctgtgtgccctGGGCCTGGTCCACAGAGATGCAACCCTAGCCGCTGCTGCCCTGAATGAGCTCCTGAAGCACAGTGCTGACTGCGAGGCCACAGAGGAGGAGCGCTGCCTGCTGACCTGCAGCGTGCTCGCCCTGCAGGGGAACAACAGCGCCGTGCAGAGACAGGCTGCCAAGGCCGTGCACAGTAATCCTGGAAATGCTGGCCTGTGGGCTCTTCTGTCTAGAGTGGTGCCTCAGTACAACCCAAGAAATGCCAGAAAGGCGCTGTTGTACAGTGGTGTGAACCAGCTGGCATCTGGCTGGCACTCTGGGGAGGATGATGACCCTGGAGTCTGGGCTGCCCTACTATCGGCATGTCACACAGAGAACACAGCCAGCTGCCTGAGGGATGCGTCTCGTGGCAGGAGGCAATTGGAGGGGGTACTGACTCAGCTTGTGTCTGAAAAGGTGCGGACTGCAGGGAGCGATATGAGGCCTAAGTTATCTGCCCTGAAAACGTGGTGTGTAGAGCAGGCTGTATGGGGGCTGAAACAGGCCGGACTTCACACTGATGCAGAGGCGGTCTGCACCAAGGCCCTCAGCAGTGACCCTGAGCAGCCTGGGCTTGTACTGCTGCAGCGGCAGGTGCAATGTGAGGCGCTCCTGCTGTCCTGCACCCAACTGCCCGATGCTGTGCTGGAGGAGCTGCGCAAAGCCGTGCTGGCCAACTATACCTCTATGCCCGCCTGGCATTGGCTGGCGGAGGTGTACCGGTCGCAGGGCTTACTGGTGGGAGCAGTGATGTGCTACAGGCAGAGTTTGCAAGTGGCGTCTCAGCAGGGAAACTTCAGCGGAAAACTGGCCAGTCTGCTCCGCCTGGCCCTGCTGGCCCTGGCACCCTGCATGgCGAATGTCTCCAACAATGAGTGGAAAGACTTAGTCAAAGAAGCTACCAGTGAAGCCCTGAAGCTAGCTTTCTCTCCCCTAGCCCTGCTGATCCAGGCTCTGCTGCAGTTCTCCATTAAGATGGGGGCCAGAGAAACTCGTCGTCTGCTGGAGAAGGTGGTCTACACAACTGGGTTCCCTGAGTCAATCACATCCGTCGCTCGCTGGTACCTCCTCAGACATCTGCATTCAAAGAATGACCAGGAGCTCATTGATacgTTAATGGATCACGCCAGAGCTGCAGGAGATTCCAGACTAGAGAAACTTTACAACCAGCTGTGCCCATAatcctaaaaacaaaactgcacttTCCATCGTTACAGGAAAATGTGCACTGGAGCTTTTTCAGCAAAGACCGGAAACCTGGTATTCAGTAATCTGAATGTTGGcttgcattaaaacaacattctGGATGTATTAAACAAACTTTCAACTTACAGTTGTCCTGCATAACAAATCAACTAAAGAAGTGAAAATAATGGGAAGTAAAATTGCTAGATAATTGCTAGAAGGTATCCATACATGCACAAAAATTACATGCAATAGCTTTTGGAGGTGTATTCCTATACTAAGTCTTAGCATTTTGCCTGTAACTACCCAAGTTCTGGTGAGTGTCAGGGAAAGGAATTGGTTACCGTTCCTCAACTATCATGTTTTCCACTTCTGTAAAATACTAagtaataatttgattttgGATTATAGGTTTGTAATCACTGTTAGCAGTTATTCTCAAGATGCTGTCTTACTCTGGTTGCACTTAAACATAGCACTGCGCTTTCTGCTACATGTTAAAGAGCTTTTGTGTGTCTGGGAATTAAAAGTGAATGTGATTTTCCCTtgttcataaaatgaaaataaccaaaaataaataattaagaatggAC

Function

GO: NA

KEGG:

id description
K12600 SKI3, TTC37; superkiller protein 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU94691 lncRNA upstream 1545 1428011 ~ 1428389 (+) True G75822
TU94689 lncRNA upstream 6812 1409180 ~ 1423122 (+) False AMCG00009852
TU94685 lncRNA upstream 6812 1412300 ~ 1423122 (+) True AMCG00009852
TU94686 lncRNA upstream 6812 1412300 ~ 1423122 (+) False AMCG00009852
TU94688 lncRNA upstream 6812 1412300 ~ 1423122 (+) False AMCG00009852
TU94696 lncRNA downstream 391 1485486 ~ 1486092 (+) True G75826
TU94697 lncRNA downstream 11406 1496501 ~ 1497008 (+) True G75827
TU94794 lncRNA downstream 649300 2134395 ~ 2154555 (+) True G75910
TU94804 lncRNA downstream 699284 2184379 ~ 2203222 (+) True G75914
TU94800 lncRNA downstream 703220 2188315 ~ 2203222 (+) False G75914
AMCG00009852 mRNA upstream 16563 1412564 ~ 1413371 (+) False AMCG00009852
AMCG00009851 mRNA upstream 61119 1360584 ~ 1368815 (+) False AMCG00009851
AMCG00009844 mRNA upstream 102341 1322622 ~ 1327593 (+) True AMCG00009844
AMCG00009845 mRNA upstream 116092 1309725 ~ 1313842 (+) True AMCG00009845
AMCG00009846 mRNA upstream 131692 1266885 ~ 1298242 (+) True AMCG00009846
AMCG00009854 mRNA downstream 26324 1511419 ~ 1511967 (+) True AMCG00009854
AMCG00009856 mRNA downstream 102203 1587298 ~ 1593804 (+) True AMCG00009856
AMCG00009855 mRNA downstream 213400 1698495 ~ 1715753 (+) True AMCG00009855
AMCG00009858 mRNA downstream 300418 1785513 ~ 1809475 (+) True AMCG00009858
AMCG00009860 mRNA downstream 327912 1813007 ~ 1825729 (+) True AMCG00009860
TU94664 other upstream 66100 1360536 ~ 1363834 (+) True AMCG00009851
TU94663 other upstream 94884 1333967 ~ 1335050 (+) True G75807
TU94657 other upstream 102370 1322618 ~ 1327564 (+) False AMCG00009844
TU94585 other upstream 392492 1037206 ~ 1037442 (+) True G75745
TU94510 other upstream 558199 867680 ~ 871735 (+) False AMCG00009821
TU96625 other downstream 9664531 11149626 ~ 11155469 (+) True G77423
TU96770 other downstream 10215611 11700706 ~ 11701081 (+) True G77541
TU97434 other downstream 14155866 15640961 ~ 15642841 (+) False AMCG00010119
TU97557 other downstream 14572436 16057531 ~ 16060087 (+) True G78198
TU97783 other downstream 15738787 17223882 ~ 17225340 (+) False AMCG00010164

Expression Profile