RNA id: AMCG00009851



Basic Information


Item Value
RNA id AMCG00009851
length 606
RNA type mRNA
GC content 0.53
exon number 6
gene id AMCG00009851
representative False

Chromosome Information


Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 1360536 ~ 1368815 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGAAGGACCCCCTGCTGTCCTGCTGCCTGCCTGAGATGCTGCAGTTTCTCTATGCAGGAGCCTATCAGTGGAAGGAGCTGCAGTCCTCTGTGGAGAAAAAGCTGTGGAGTGCACAGGAGGTGCGTGAGCTGCTGCAGACTGTAAGACGACTTCTCGGTAATGAAGAGGACCCCATCTCTCTGGGCAGGTTCCTCAACAGCCCAGTGTTCTCAGACATCGCGTTCATGCTTGAGGGTCAGCAACATATTGACCTGCTAGGCACGCCTGTTCCAGCCCACAGGGCAGTCCTCTCAGTGCCCTGCAAGTTGATGGCCATAATGTTCAATGGGAAATATGTGGAGGCCAGCAGTAGTGAGTTTTCCTTCCTTGGCATCTCCAGAGAGACCTTCCTGTCTTACCTGGAATACATTTACACCGATGCATGCTGTCCAGATAGTCTCCAGCAGGCCATGTCTTTATTGGTGTTTGCGGATATGTACCAGCTGACCCGCTTGCAGCACTTGTGTGAGGCGTGTGTGTGCAAGTACCTGGAGAGCATGCCCAGCAGGAAGCTGCTCACCACCAGCCTAAATATAGTCACCCTTCTCAGGAGGGCCCAGAAATAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU94640 lncRNA upstream 80357 1266859 ~ 1280227 (+) False AMCG00009846
TU94641 lncRNA upstream 87035 1266859 ~ 1273549 (+) False AMCG00009846
TU94618 lncRNA upstream 185630 1170706 ~ 1174954 (+) True G75767
TU94583 lncRNA upstream 328867 1031466 ~ 1031717 (+) True G75743
TU94559 lncRNA upstream 364737 984596 ~ 995847 (+) False AMCG00009838
TU94681 lncRNA downstream 29343 1398158 ~ 1399008 (+) True G75817
TU94684 lncRNA downstream 40365 1409180 ~ 1414030 (+) False AMCG00009852
TU94689 lncRNA downstream 40365 1409180 ~ 1423122 (+) False AMCG00009852
TU94685 lncRNA downstream 43485 1412300 ~ 1423122 (+) True AMCG00009852
TU94686 lncRNA downstream 43485 1412300 ~ 1423122 (+) False AMCG00009852
AMCG00009844 mRNA upstream 32991 1322622 ~ 1327593 (+) True AMCG00009844
AMCG00009845 mRNA upstream 46742 1309725 ~ 1313842 (+) True AMCG00009845
AMCG00009846 mRNA upstream 62342 1266885 ~ 1298242 (+) True AMCG00009846
AMCG00009839 mRNA upstream 115484 1234756 ~ 1245100 (+) True AMCG00009839
AMCG00009840 mRNA upstream 137135 1197630 ~ 1223449 (+) True AMCG00009840
AMCG00009852 mRNA downstream 43749 1412564 ~ 1413371 (+) False AMCG00009852
AMCG00009850 mRNA downstream 61119 1429934 ~ 1485095 (+) True AMCG00009850
AMCG00009854 mRNA downstream 142604 1511419 ~ 1511967 (+) True AMCG00009854
AMCG00009856 mRNA downstream 218483 1587298 ~ 1593804 (+) True AMCG00009856
AMCG00009855 mRNA downstream 329680 1698495 ~ 1715753 (+) True AMCG00009855
TU94663 other upstream 25534 1333967 ~ 1335050 (+) True G75807
TU94657 other upstream 33020 1322618 ~ 1327564 (+) False AMCG00009844
TU94585 other upstream 323142 1037206 ~ 1037442 (+) True G75745
TU94510 other upstream 488849 867680 ~ 871735 (+) False AMCG00009821
TU96625 other downstream 9780811 11149626 ~ 11155469 (+) True G77423
TU96770 other downstream 10331891 11700706 ~ 11701081 (+) True G77541
TU97434 other downstream 14272146 15640961 ~ 15642841 (+) False AMCG00010119
TU97557 other downstream 14688716 16057531 ~ 16060087 (+) True G78198
TU97783 other downstream 15855067 17223882 ~ 17225340 (+) False AMCG00010164

Expression Profile