RNA id: TU94664



Basic Information


Item Value
RNA id TU94664
length 674
RNA type TUCP
GC content 0.55
exon number 5
gene id AMCG00009851
representative True

Chromosome Information


Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 1360536 ~ 1368815 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


AGCGACAGCACACACAGGAGTAATGGATGCCCCCCATCCCGGGTCCTCATGAAGGACCCCCTGCTGTCCTGCTGCCTGCCTGAGATGCTGCAGTTTCTCTATGCAGGAGCCTATCAGTGGAAGGAGCTGCAGTCCTCTGTGGAGAAAAAGCTGTGGAGTGCACAGGAGGTGCGTGAGCTGCTGCAGACTGTAAGACGACTTCTCGGTAATGAAGAGTGCTCAAATGACCATGGGCCCCCTAGGATCCCCCAGCAGGACCCCATCTCTCTGGGCAGGTTCCTCAACAGCCCAGTGTTCTCAGACATCGCGTTCATGCTTGAGGGCACGCCTGTTCCAGCCCACAGGGCAGTCCTCTCAGTGCCCTGCAAGTTGATGGCCATAATGTTCAATGGGAAATATGTGGAGGCCAGCAGTAGTGAGTTTTCCTTCCTTGGCATCTCCAGAGAGACCTTCCTGTCTTACCTGGAATACATTTACACCGATGCATGCTGTCCAGATAGTCTCCAGCAGGCCATGTCTTTATTGGTGTTTGCGGATATGTACCAGCTGACCCGCTTGCAGCACTTGTGTGAGGCGTGTGTGTGCAAGTACCTGGAGAGCATGCCCAGCAGGAAGCTGCTCACCACCAGCCTAAATATAGTCACCCTTCTCAGGAGGGCCCAGGTAAGAGAAAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU94640 lncRNA upstream 80309 1266859 ~ 1280227 (+) False AMCG00009846
TU94641 lncRNA upstream 86987 1266859 ~ 1273549 (+) False AMCG00009846
TU94618 lncRNA upstream 185582 1170706 ~ 1174954 (+) True G75767
TU94583 lncRNA upstream 328819 1031466 ~ 1031717 (+) True G75743
TU94559 lncRNA upstream 364689 984596 ~ 995847 (+) False AMCG00009838
TU94681 lncRNA downstream 34324 1398158 ~ 1399008 (+) True G75817
TU94684 lncRNA downstream 45346 1409180 ~ 1414030 (+) False AMCG00009852
TU94689 lncRNA downstream 45346 1409180 ~ 1423122 (+) False AMCG00009852
TU94685 lncRNA downstream 48466 1412300 ~ 1423122 (+) True AMCG00009852
TU94686 lncRNA downstream 48466 1412300 ~ 1423122 (+) False AMCG00009852
AMCG00009844 mRNA upstream 32943 1322622 ~ 1327593 (+) True AMCG00009844
AMCG00009845 mRNA upstream 46694 1309725 ~ 1313842 (+) True AMCG00009845
AMCG00009846 mRNA upstream 62294 1266885 ~ 1298242 (+) True AMCG00009846
AMCG00009839 mRNA upstream 115436 1234756 ~ 1245100 (+) True AMCG00009839
AMCG00009840 mRNA upstream 137087 1197630 ~ 1223449 (+) True AMCG00009840
AMCG00009852 mRNA downstream 48730 1412564 ~ 1413371 (+) False AMCG00009852
AMCG00009850 mRNA downstream 66100 1429934 ~ 1485095 (+) True AMCG00009850
AMCG00009854 mRNA downstream 147585 1511419 ~ 1511967 (+) True AMCG00009854
AMCG00009856 mRNA downstream 223464 1587298 ~ 1593804 (+) True AMCG00009856
AMCG00009855 mRNA downstream 334661 1698495 ~ 1715753 (+) True AMCG00009855
TU94663 other upstream 25486 1333967 ~ 1335050 (+) True G75807
TU94657 other upstream 32972 1322618 ~ 1327564 (+) False AMCG00009844
TU94585 other upstream 323094 1037206 ~ 1037442 (+) True G75745
TU94510 other upstream 488801 867680 ~ 871735 (+) False AMCG00009821
TU96625 other downstream 9785792 11149626 ~ 11155469 (+) True G77423
TU96770 other downstream 10336872 11700706 ~ 11701081 (+) True G77541
TU97434 other downstream 14277127 15640961 ~ 15642841 (+) False AMCG00010119
TU97557 other downstream 14693697 16057531 ~ 16060087 (+) True G78198
TU97783 other downstream 15860048 17223882 ~ 17225340 (+) False AMCG00010164

Expression Profile