RNA id: TU94686


Basic Information

Item Value
RNA id TU94686
length 1441
lncRNA type sense_over
GC content 0.40
exon number 5
gene id AMCG00009852
representative False

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 1409180 ~ 1423122 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

attgtatctgctgatccacctattttagtatcatctgcaaacatGTAGTCTATAGTTTGGCACAAGttcataatattttaaagttatgaaTTGTCAAGGGGCTGTGTGATTATAGTGCATTTTTACCTTCAAACATTTTCTCCTTTGAAAGCCTCCTCTGGAACAACTTGTAGGATGGAGTTAATGCCACTTGGTTTGTGAAAAGTAACACTGTAGAGTGATCTGGAGGATACTcagtgatgtgtttgttttatttctccagAGGATGAAAGCAAGTGGTCTTGGACTGATATTGGGATGGTGGCTGTTGTTGGAGCTATTGCAGTTGTAGCAACTCCAGTGGTAATATCAGCAGCTGGGTTCACTGCATCTGGCATAGCTGCAGGATCTGTGGCTGCCACTCTACAATCAGTGGGGACTGCTGGGCTGGGAGTTGCTGGTAAAGCCACAGTAGGAATTGTAGGAGGTACCTCAACATACCTCCTGAAGAAGCAATTGGATAGTGAcaatgacaataacaaaaaatgatgAGAGGAAAACGTCGAGTTAAAGTAAAAGCTTTAGctatataaacacattgtgGAGGAAACACACAGTTGATGGAGAACTTGACTGTAAGCATGGCCTGAGACTGCTGGAAGTAACATTGGTCACAGAAGCTAGCTGCCCCCTGCAAATCATGGTCCAATTAGGCTCTAGTATATTTCCTCACAAACAGtaagtttccttggccgaccgcTGCGTCTACgctcctcaacgttgcccgtttctttgtgtgtcttcaaaagagcttggacagcccATCTGGAAACCCCCATCTgacttgaaatgtctgcctgggagagaccttgctgatgcagtataactaccttgtgtcttgttgctgtgctcagtctagccatggtgtatgacttttgacattaaactgtcttcagcaacctcaccttgttagctgagtttggctgtttctcacccagttttattcctcctacacagctgtttctgtttcagttaataattgtgtttcaacctacatattgaattgatgatcattagcacctgtgtggtataattgtttaatcatacacctgactatttgcctacaaaatccctgactttgtgccaaggagaattgatgctgttttgaaggcaaagggtggtcacaaaaaatattgatttgatttagatttttcttctgttcactctctttgcatttgataaataaaatctattaatgtctatttttgaaagcattcttactttacagcactttttcacacctgcctaaaacttgtgCCCAGTACTGTATATGGTTTAGCAGATTTCTATTTTCCCTCATTTAGACAATGTCTTCCtatatacttgtgtaaattggaatttgtaaattgcatgctgcactgtattattgcactttgttttgctcttatattttgtgagttgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU94681 lncRNA upstream 13292 1398158 ~ 1399008 (+) True G75817
TU94640 lncRNA upstream 132073 1266859 ~ 1280227 (+) False AMCG00009846
TU94641 lncRNA upstream 138751 1266859 ~ 1273549 (+) False AMCG00009846
TU94618 lncRNA upstream 237346 1170706 ~ 1174954 (+) True G75767
TU94583 lncRNA upstream 380583 1031466 ~ 1031717 (+) True G75743
TU94691 lncRNA downstream 4889 1428011 ~ 1428389 (+) True G75822
TU94696 lncRNA downstream 62364 1485486 ~ 1486092 (+) True G75826
TU94697 lncRNA downstream 73379 1496501 ~ 1497008 (+) True G75827
TU94794 lncRNA downstream 711273 2134395 ~ 2154555 (+) True G75910
TU94804 lncRNA downstream 761257 2184379 ~ 2203222 (+) True G75914
AMCG00009851 mRNA upstream 43485 1360584 ~ 1368815 (+) False AMCG00009851
AMCG00009844 mRNA upstream 84707 1322622 ~ 1327593 (+) True AMCG00009844
AMCG00009845 mRNA upstream 98458 1309725 ~ 1313842 (+) True AMCG00009845
AMCG00009846 mRNA upstream 114058 1266885 ~ 1298242 (+) True AMCG00009846
AMCG00009839 mRNA upstream 167200 1234756 ~ 1245100 (+) True AMCG00009839
AMCG00009850 mRNA downstream 6812 1429934 ~ 1485095 (+) True AMCG00009850
AMCG00009854 mRNA downstream 88297 1511419 ~ 1511967 (+) True AMCG00009854
AMCG00009856 mRNA downstream 164176 1587298 ~ 1593804 (+) True AMCG00009856
AMCG00009855 mRNA downstream 275373 1698495 ~ 1715753 (+) True AMCG00009855
AMCG00009858 mRNA downstream 362391 1785513 ~ 1809475 (+) True AMCG00009858
TU94664 other upstream 48466 1360536 ~ 1363834 (+) True AMCG00009851
TU94663 other upstream 77250 1333967 ~ 1335050 (+) True G75807
TU94657 other upstream 84736 1322618 ~ 1327564 (+) False AMCG00009844
TU94585 other upstream 374858 1037206 ~ 1037442 (+) True G75745
TU94510 other upstream 540565 867680 ~ 871735 (+) False AMCG00009821
TU96625 other downstream 9726504 11149626 ~ 11155469 (+) True G77423
TU96770 other downstream 10277584 11700706 ~ 11701081 (+) True G77541
TU97434 other downstream 14217839 15640961 ~ 15642841 (+) False AMCG00010119
TU97557 other downstream 14634409 16057531 ~ 16060087 (+) True G78198
TU97783 other downstream 15800760 17223882 ~ 17225340 (+) False AMCG00010164

Expression Profile