RNA id: AMCG00009854



Basic Information


Item Value
RNA id AMCG00009854
length 549
RNA type mRNA
GC content 0.60
exon number 1
gene id AMCG00009854
representative True

Chromosome Information


Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 1511419 ~ 1511967 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGGACGAGAAGCACCAGGAGGGAAGCGCCTGCGAGCAAGAGGCGCTGTCCTACCAGAAGAGGATCTGGAAGAATCTGCAGGAGAAGACCAAGCCTTTCCTGAGCTCCAAGACAGGCTCCGAGCGCCGCAGTGCAGAAGGAAAGAGGGAGACGGGCAAATGGATGTTCATGAGGAAGAAGAAGCAAGTCCTGGACCGCGTCTTTTCCTCCTCCCAGCCCAACCTCTGCTGCTCGGCTGCGGTGCGTCTCGACAGGGACAAGTCCCTGTGCTGTACGCCGGAGCCCGGCTGCAGTAAACCGGCGTCAGGGCTGAAGCAAGTCGGACCCAGAGATGCGGAGAGCGCCGGCTTGTCCAAGCAGACGGTGGCGGGACGCGGCAGCCCGAAGCCCGCAGTATCTCATCTCGTCCTGTCCCACCAAAAAAGCTCCTCTCTGGGGTCGGCATGCTTCGAGAGGCTGGTGGAGCCGGCTGGGGGCGAAACGGAGGAGCACAGGAGGATGAACGCCAGCGATTCTGTAAGTAAATCATCTTTTAAAACTCTTGCTTAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU94697 lncRNA upstream 14411 1496501 ~ 1497008 (+) True G75827
TU94696 lncRNA upstream 25327 1485486 ~ 1486092 (+) True G75826
TU94691 lncRNA upstream 83030 1428011 ~ 1428389 (+) True G75822
TU94689 lncRNA upstream 88297 1409180 ~ 1423122 (+) False AMCG00009852
TU94794 lncRNA downstream 622428 2134395 ~ 2154555 (+) True G75910
TU94804 lncRNA downstream 672412 2184379 ~ 2203222 (+) True G75914
TU94800 lncRNA downstream 676348 2188315 ~ 2203222 (+) False G75914
TU94803 lncRNA downstream 676348 2188315 ~ 2203222 (+) False G75914
TU94852 lncRNA downstream 869890 2381857 ~ 2386735 (+) True G75957
AMCG00009850 mRNA upstream 26324 1429934 ~ 1485095 (+) True AMCG00009850
AMCG00009852 mRNA upstream 98048 1412564 ~ 1413371 (+) False AMCG00009852
AMCG00009851 mRNA upstream 142604 1360584 ~ 1368815 (+) False AMCG00009851
AMCG00009844 mRNA upstream 183826 1322622 ~ 1327593 (+) True AMCG00009844
AMCG00009845 mRNA upstream 197577 1309725 ~ 1313842 (+) True AMCG00009845
AMCG00009856 mRNA downstream 75331 1587298 ~ 1593804 (+) True AMCG00009856
AMCG00009855 mRNA downstream 186528 1698495 ~ 1715753 (+) True AMCG00009855
AMCG00009858 mRNA downstream 273546 1785513 ~ 1809475 (+) True AMCG00009858
AMCG00009860 mRNA downstream 301040 1813007 ~ 1825729 (+) True AMCG00009860
AMCG00009859 mRNA downstream 466110 1978077 ~ 1981600 (+) True AMCG00009859
TU94664 other upstream 147585 1360536 ~ 1363834 (+) True AMCG00009851
TU94663 other upstream 176369 1333967 ~ 1335050 (+) True G75807
TU94657 other upstream 183855 1322618 ~ 1327564 (+) False AMCG00009844
TU94585 other upstream 473977 1037206 ~ 1037442 (+) True G75745
TU94510 other upstream 639684 867680 ~ 871735 (+) False AMCG00009821
TU96625 other downstream 9637659 11149626 ~ 11155469 (+) True G77423
TU96770 other downstream 10188739 11700706 ~ 11701081 (+) True G77541
TU97434 other downstream 14128994 15640961 ~ 15642841 (+) False AMCG00010119
TU97557 other downstream 14545564 16057531 ~ 16060087 (+) True G78198
TU97783 other downstream 15711915 17223882 ~ 17225340 (+) False AMCG00010164

Expression Profile