RNA id: AMCG00009855


Basic Information

Item Value
RNA id AMCG00009855
length 2953
RNA type mRNA
GC content 0.36
exon number 4
gene id AMCG00009855
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 1698495 ~ 1715753 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GATGCCTCAGGACTCGGAGAGAAAGGGCTTCATGGACAAACTGTATGCCATTCAGGATGTGTGCATCAGTGTGCAGAATGCTCTGGATGAAGTGGCCTCATACGGGGAAAGGATAAAGAATACTTTCAACTGGACTGTGCCTTTCCTGAGCTGGCTGGCCATCGTTGCTCTTTGTGTCGCCACTGTCGCCATCTACTTCATCCCTCTGAGATACATCGTGTTGGCATGGGGTGTTAATAAATTCACAAAGAAACTTCGCGACCCATATACAATTGATAACAACGAGCTGCTGGACTTTCTCTCCAGAGTTCCTTCAGATGTACAAGTGGTGCAGTACCAAGAGCTGAAACCAGACCCTGGTCCAAGCCCAagtaaaaggaagaaaaacaatcctgGGTAGCCACTTCCCCGTCCGAGGAGCCGTCCCCTCGCAGCATGGACAATATGAAAGAGACGTTCTGGATCAGCTCACCattctgtctttcttcttcaattgggttttatttattttctttgtaaatgaTGTACAGACATAGAAAGTGTAATtatcactgtatttatttattttttgtccaaGGACAGGAGAAAGGAAATGGTAGTTGCAAAGTGCAAGCTAATGAAGTTaatgtgtttgatttaaacTAATTAGCCCTGTTTAAATAACTAGGTATCGAGCTGAAAGGCATCAGGCAGCCCAGTAACCATTACTATGttttcattacattgttttaaaataaacgtcTCAATCTAAATCATTCTACTGCGCATGCTCACAGTTAAAGACCACCTTGGGTGCCTGCATACTCCCCTGTAGCAAAAATGATTCCATGACATAATTGCTggtctttttattgttttaaatacttgatcatttttatttcctaaaCATTTAGCAAGGACCTAAATGTGTAATGTagtcacattaaaaaacaaacaaacaaaaaaaaaccatgaaaataaaagctgaaTCTAAATCTCATCTAAAGAATAATTTTAGTCCActgacatatttgttttttgttacattgttttatggCAGCTACTCACACAATTTGCATGGAAGTTCTGGAGCTTGTGAATGATTTTCCTCAGTCTATTCCATCTTATTTTTTAGATTTAGCTTGCAGGAACTTCAGATAACCTGGGAATGAAATGCATGTGAACACCTATTGGAATTCAGGCGCAAAAGGCTTTTGACATCAATATTTGTCATTACATTGTATACACTGCAATGATGACAACTGTTTCTTCAGTCAGGATAAATAGTCACTATCAGCTAAAGTCTCTTTGATATTTTTCTCCCACACCccaataataaaagcaaacaaaacatttgttaatttatcaaaTGAAAGCTAGATCGATTGCAGTACCACAGAGCTAATGCAGGTGTCATCAAATAACACATCTGTACAGAATAAGCCATGCTAAAAATAATCAAGGGTTTTGAGAAGAATGCAGtaatctgattttttttaaaggcaggtTTGTTTGGCTTCATTTTGCCATTCTTCTTTGTTCCTGCTGCTAGTGGGAGCCATCTCCTGCCTTGGGCTAGCAGCGTCCCAGTGTGCTCCACCTCACGGGCTGAATACTCACctttgatttgtgtttgaaGGCATaatctgtattgtgtgtgtaccCTGTTAGCAGCCAGGCTGTTTACTTCAGATTCTTTGTTATGCAAAACAGAGCTATGTTTAAGTCGAGTGTGTGAACATAAATCTGGTCTCGGTGTTATGTGCACCACACTTTAATGCGACACAAGTGTGACAGGAGGCTGATGAGACAAGTTGGCAAGCTTGGCAGGGCAAGTTTTTGTTCTTAGAGGTAACAAAAGCACAGGCTTGTGGCTTTTGCATTTCCATCTCTGCTTACTTCTTTTATCTTCTAACATTGTACAAATTCAAGACACTGTGCAGGACCCAGGGGTGTGCAGAGAGCATCCACTTGACAAACATATCCTAAACTATGAtccatatatatgtacaaaataaatccaatgtATAAAGGTTAACTTAGCCACTTTATGAGGAATTAGCATCCCTACCTTCACAGTGAAGGAATCATTCTGAAAACCCAGATTTACTTCCAAGGACCAGTATCCCATAGTAgcattcaaaaatatgtttaagaaTTCAATCCAGTCAAATAAGAGATTTAAGTatggattttgtattattttcatattgcttctttttatttatttttttttatttatagatatatatgtaacCAATAGTATTAGTGGAACTTTTAAAGAGTGTGTCTTTAAAACAGTATGAGAAAACTGTACAATTCAATGTGTtgataaacaaaccaaacaaaataaattaaaagaacatcCATATGTATtctctttaaataatgtattctacAAAAAGGGACATTtatatattactatttatacTAAATGTTGACcttgcataaaacaaaacaaaaatgagacTATTATGCTCTAAAACAACATGCTAGAGTCACAAGATCTTTTGGCCAACACCAAAAGTGAGGATTTTCCTtgcaaaatcaaaaatcaaactaGAAAAACTGTTGATGGATCATGAGATTCTATGAAGTAGAATGTATCTCATCCATAATGTATGCACTTTCAATCATTCTgttagtatattttttatttttctcttttttgcgTATATATTATAAGTTTTTGTTTGCATCATCGTAAAGCAAAGTTGCCCGTTTGTTATACTGtacagatgtatttgttttcactaaAAATATCAATTCAAGCTAGCTTTGGAAGGCATGCCATCTAGTCAGTGATAGCTTCTGAATTCTCAGTATTGTCTGTGACATCGCTATCCTTACATTGCTTACAAGTTAGTTTTGAAGAAAGTTTGAAAGGATGGTTTGGAGGGGGGAGGTGGGTGGGTTGCTGTTATGAATATGTAAATCcatttaaaagaacattttaaaaaatgaaaacttttca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU94697 lncRNA upstream 201487 1496501 ~ 1497008 (+) True G75827
TU94696 lncRNA upstream 212403 1485486 ~ 1486092 (+) True G75826
TU94691 lncRNA upstream 270106 1428011 ~ 1428389 (+) True G75822
TU94686 lncRNA upstream 275373 1412300 ~ 1423122 (+) False AMCG00009852
TU94794 lncRNA downstream 418642 2134395 ~ 2154555 (+) True G75910
TU94804 lncRNA downstream 468626 2184379 ~ 2203222 (+) True G75914
TU94800 lncRNA downstream 472562 2188315 ~ 2203222 (+) False G75914
TU94803 lncRNA downstream 472562 2188315 ~ 2203222 (+) False G75914
TU94852 lncRNA downstream 666104 2381857 ~ 2386735 (+) True G75957
AMCG00009856 mRNA upstream 104691 1587298 ~ 1593804 (+) True AMCG00009856
AMCG00009854 mRNA upstream 186528 1511419 ~ 1511967 (+) True AMCG00009854
AMCG00009850 mRNA upstream 213400 1429934 ~ 1485095 (+) True AMCG00009850
AMCG00009852 mRNA upstream 285124 1412564 ~ 1413371 (+) False AMCG00009852
AMCG00009851 mRNA upstream 329680 1360584 ~ 1368815 (+) False AMCG00009851
AMCG00009858 mRNA downstream 69760 1785513 ~ 1809475 (+) True AMCG00009858
AMCG00009860 mRNA downstream 97254 1813007 ~ 1825729 (+) True AMCG00009860
AMCG00009859 mRNA downstream 262324 1978077 ~ 1981600 (+) True AMCG00009859
AMCG00009857 mRNA downstream 326802 2042555 ~ 2044464 (+) True AMCG00009857
AMCG00009863 mRNA downstream 1036507 2752260 ~ 2768508 (+) True AMCG00009863
TU94664 other upstream 334661 1360536 ~ 1363834 (+) True AMCG00009851
TU94663 other upstream 363445 1333967 ~ 1335050 (+) True G75807
TU94657 other upstream 370931 1322618 ~ 1327564 (+) False AMCG00009844
TU94585 other upstream 661053 1037206 ~ 1037442 (+) True G75745
TU94510 other upstream 826760 867680 ~ 871735 (+) False AMCG00009821
TU96625 other downstream 9433873 11149626 ~ 11155469 (+) True G77423
TU96770 other downstream 9984953 11700706 ~ 11701081 (+) True G77541
TU97434 other downstream 13925208 15640961 ~ 15642841 (+) False AMCG00010119
TU97557 other downstream 14341778 16057531 ~ 16060087 (+) True G78198
TU97783 other downstream 15508129 17223882 ~ 17225340 (+) False AMCG00010164

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00060943 False 6760 mRNA 0.39 20 NC_007116.7 50442112 ~ 50748081 (-)
grasscarp (Ctenopharyngodon idella) CI01000039_00003341_00066948.mRNA True 1581 mRNA 0.49 14 CI01000039 3341 ~ 66948 (+)