RNA id: AMCG00009856



Basic Information


Item Value
RNA id AMCG00009856
length 429
RNA type mRNA
GC content 0.48
exon number 4
gene id AMCG00009856
representative True

Chromosome Information


Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 1587298 ~ 1593804 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ACAAGTGATCCTTATGTAAAGTTCAAAATCGCTGGGAAGGAAGTTTTTAGAAGCAAAACAATTCACAAAAACCTCAACCCCATCTGGGAGGAGAAAGTCAGCCTTCTTGTGGACAGCCTCAGAGAGCCCTTGTACGTAAAGGTGTTTGACTATGACTTCGGACTGCAGGATGACTTCATGGGATCTGCCTACCTGTACCTGGACGCGCTGGAGCACAAGagGACAACGGATGTGATGTTAAACCTGAAGGACCCCCAGTATCCCGACCATGACCTGGGAGCCCTGTCCCTTTCAGTCAACCTCTCCCCTAAAGAAGGAGACTTGAGGGAAGCTGTAAAAAGCAATGTTCAAAATCCATCGCTGGAGGCCTTACAGGGCAACAGTGAGTCTACCTGTAGCAAAGATGTACCTGTAGCAGAGAGTTACCTG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU94697 lncRNA upstream 90290 1496501 ~ 1497008 (+) True G75827
TU94696 lncRNA upstream 101206 1485486 ~ 1486092 (+) True G75826
TU94691 lncRNA upstream 158909 1428011 ~ 1428389 (+) True G75822
TU94686 lncRNA upstream 164176 1412300 ~ 1423122 (+) False AMCG00009852
TU94794 lncRNA downstream 540591 2134395 ~ 2154555 (+) True G75910
TU94804 lncRNA downstream 590575 2184379 ~ 2203222 (+) True G75914
TU94800 lncRNA downstream 594511 2188315 ~ 2203222 (+) False G75914
TU94803 lncRNA downstream 594511 2188315 ~ 2203222 (+) False G75914
TU94852 lncRNA downstream 788053 2381857 ~ 2386735 (+) True G75957
AMCG00009854 mRNA upstream 75331 1511419 ~ 1511967 (+) True AMCG00009854
AMCG00009850 mRNA upstream 102203 1429934 ~ 1485095 (+) True AMCG00009850
AMCG00009852 mRNA upstream 173927 1412564 ~ 1413371 (+) False AMCG00009852
AMCG00009851 mRNA upstream 218483 1360584 ~ 1368815 (+) False AMCG00009851
AMCG00009844 mRNA upstream 259705 1322622 ~ 1327593 (+) True AMCG00009844
AMCG00009855 mRNA downstream 104691 1698495 ~ 1715753 (+) True AMCG00009855
AMCG00009858 mRNA downstream 191709 1785513 ~ 1809475 (+) True AMCG00009858
AMCG00009860 mRNA downstream 219203 1813007 ~ 1825729 (+) True AMCG00009860
AMCG00009859 mRNA downstream 384273 1978077 ~ 1981600 (+) True AMCG00009859
AMCG00009857 mRNA downstream 448751 2042555 ~ 2044464 (+) True AMCG00009857
TU94664 other upstream 223464 1360536 ~ 1363834 (+) True AMCG00009851
TU94663 other upstream 252248 1333967 ~ 1335050 (+) True G75807
TU94657 other upstream 259734 1322618 ~ 1327564 (+) False AMCG00009844
TU94585 other upstream 549856 1037206 ~ 1037442 (+) True G75745
TU94510 other upstream 715563 867680 ~ 871735 (+) False AMCG00009821
TU96625 other downstream 9555822 11149626 ~ 11155469 (+) True G77423
TU96770 other downstream 10106902 11700706 ~ 11701081 (+) True G77541
TU97434 other downstream 14047157 15640961 ~ 15642841 (+) False AMCG00010119
TU97557 other downstream 14463727 16057531 ~ 16060087 (+) True G78198
TU97783 other downstream 15630078 17223882 ~ 17225340 (+) False AMCG00010164

Expression Profile