RNA id: TU95199


Basic Information

Item Value
RNA id TU95199
length 1587
lncRNA type sense_over
GC content 0.38
exon number 4
gene id AMCG00009898
representative False

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 4910970 ~ 4920884 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACTTCCAGGAGCACACAGGAAGTGTGATGTGGCTGTGAGAACAGTTTCATTATGTCTGCTATATTCAACTTCCAGAGCCTGCTGACAGTCATCCTGCTCCTGATTTGTACCTGTGCTTATATCAGAGCCTTGGCTCCCAGCATtcttgataaaaacaaaaccggAGTTTTGGGAATATTCTGGAAATGTGCGAGGATAGGTGAACGTAAAAGCCCGTATGTGGCTTTGTGCTGTGTAGTAATGGccttcagtattttatttgcacagtAACACAATGCATGCAGGGGCACTGGCGGGGGGGCTGGAGCTGGAGTCAGGGACAGCTGTCCCTGATGAGAAGcagcagaaaacaaagaagatGTCATCACAGAAATCAAGGTTGAAAATCCCTGTTAAGGACACATTTCGAAGGTGATCCTGTCTCTGCTTACAATCGCGCAGAGCTGTGGTTGGCATTGAATGCACTGCAGCTATGTGTTGGACCAAGGACATTTCTGAAGAATACAATGTACATTCTTCCCCATTGAACCCCAGTACCTTTATATTTCCCCCTGTAATGGTCTGTTTTATTGGATTTGCTTTAAACCACTgtcctttcaaataaaataaatgtcatattcttgttttctgttaacGAATTGTCACTTCTCATATTACTTATGTTTTGATGTCTTATGTTTTGATGTCATACTACTTCAGTGCAAATTATGAAAGACATAAACCTGAGAATATGTCCTGTATATGCTGTGACATATTCAAGTAATTGATCCTCAAGATTTAATGAAACAGGATTCTATTTAATAAACATGATTAGGGAGGTAGGGGATGTGGGGGGGTGAAGGcaaatgcttgtttttatttagagaAAAGTGTTCTTGCAATAATGGCAGAAAAATTGGCAGAAAAGACCTCTGGGATACTGAAGAGATTATGTGGTACTTTTACCAACAATGTCAGATTCTCTAAATTATAACAGATGTTCAGTATCATTTTCCAGGATTTAAAAACCCCTGTGTTGTTGTAATTAGCTTCCATTGGCAAACTTGTTTTTCAATGGTGGCCATTGTTATGAAATGCATTCTCTCTTAATTAGTTAACCTGGAGCAGAATGGGATTGATATTGAAGGAGACTGCAATCCTCCTTCCTAATATCTGCAGCACATGCTGAAGTTTCTATTTTCGAGAGACTGGAAAAATGAAATAGTGTTTGCAAACATTAACTTCTATGTGAAGCGTGGGCATGTTTTATACTTGTATATTGTCTGTGTGATATTGGTGTTATCCTTCCAAGCAAGAAAGTAGTCTGCAGTGTCATGAAAGCATCTTAATCctgaataaaatagaaaaagaagaCTGATAAAGTGTGGTTTTGTAGCATATAGCAGAAACTCAGCACAACATAGGTAACTATTCATTTTATAGCTAATAATTCAGAGGggtggattttatttatttgcttccCAAATTGTTAACACTCTTTGTATTGACtatatattaaagaaacagACTGATTGAACCCCACCTGATATAAAGATTTGTTCTTTATCTGTACTTTACAAGATCATTTCAAGTCTGTTTTTGTCTCGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU95119 lncRNA upstream 657716 4253237 ~ 4253554 (+) True G76186
TU95095 lncRNA upstream 1016451 3891161 ~ 3894819 (+) False G76168
TU95097 lncRNA upstream 1016451 3892584 ~ 3894819 (+) True G76168
TU95090 lncRNA upstream 1114262 3796551 ~ 3797008 (+) True G76163
TU95024 lncRNA upstream 1307665 3538497 ~ 3603605 (+) True G76105
TU95233 lncRNA downstream 237542 5158388 ~ 5228786 (+) True G76266
TU95253 lncRNA downstream 322881 5243727 ~ 5248181 (+) False AMCG00009897
TU95334 lncRNA downstream 541677 5462523 ~ 5462811 (+) True G76346
TU95410 lncRNA downstream 823411 5744257 ~ 5751212 (+) True G76408
TU95417 lncRNA downstream 847031 5767877 ~ 5769052 (+) False AMCG00009915
AMCG00009888 mRNA upstream 194326 4699682 ~ 4716944 (+) True AMCG00009888
AMCG00009891 mRNA upstream 432547 4477621 ~ 4478723 (+) True AMCG00009891
AMCG00009889 mRNA upstream 434812 4475292 ~ 4476458 (+) True AMCG00009889
AMCG00009890 mRNA upstream 439297 4346664 ~ 4471973 (+) True AMCG00009890
AMCG00009885 mRNA upstream 593403 4317038 ~ 4317867 (+) True AMCG00009885
AMCG00009896 mRNA downstream 90532 5011378 ~ 5013330 (+) True AMCG00009896
AMCG00009904 mRNA downstream 221157 5142003 ~ 5144936 (+) True AMCG00009904
AMCG00009897 mRNA downstream 311786 5232632 ~ 5248181 (+) True AMCG00009897
AMCG00009906 mRNA downstream 517621 5438467 ~ 5448319 (+) True AMCG00009906
AMCG00009905 mRNA downstream 537440 5458286 ~ 5459884 (+) True AMCG00009905
TU94664 other upstream 3547436 1360536 ~ 1363834 (+) True AMCG00009851
TU94663 other upstream 3576220 1333967 ~ 1335050 (+) True G75807
TU94657 other upstream 3583706 1322618 ~ 1327564 (+) False AMCG00009844
TU94585 other upstream 3873828 1037206 ~ 1037442 (+) True G75745
TU94510 other upstream 4039535 867680 ~ 871735 (+) False AMCG00009821
TU96625 other downstream 6228780 11149626 ~ 11155469 (+) True G77423
TU96770 other downstream 6779860 11700706 ~ 11701081 (+) True G77541
TU97434 other downstream 10720115 15640961 ~ 15642841 (+) False AMCG00010119
TU97557 other downstream 11136685 16057531 ~ 16060087 (+) True G78198
TU97783 other downstream 12303036 17223882 ~ 17225340 (+) False AMCG00010164

Expression Profile