RNA id: AMCG00009905


Basic Information

Item Value
RNA id AMCG00009905
length 1599
RNA type mRNA
GC content 0.59
exon number 1
gene id AMCG00009905
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 5458286 ~ 5459884 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAGGATGCGATGGAAGTGCGCACGGACGGTAACTCCCTGCTGAAGGCCGTCTACTTGAGCAGGCTACGTCTGACCCGGCTGCTCCTGGAGGGGGGCGCCTACATCAACGAGAGCAACGACCGTGGGGAGACCCCCCTGATGATCGCCTGCAAGACCAAGCACTCAGACCAGCAGAGTGTGAGCAAGGCCAAGATGGTCAAGTACCTGCTGGAGAACAACGCCGACCCCAACATCCAGGACAAGTCAGGGAAGACGGCGCTGATGCACGCCTGTCTAGAGCGGGCTGGGGTGGAGGTGGTATCCCTGCTGTTGAAAAGCGGGGCTGACCCCAGCCTGGAGGACCACTCCGGCTGCTCCGCCCTGGTCTATGCCGTCAACTCCGATGACAAGGAGACGCTGAAGGTCCTGCTGGATGCCTGCAAGGCGCGGGGGAAAGAggtcatcatcatcaccacaGACAAGCTGCCCTCAGGGAGGCAGATGACCAAGCAGTACCTGAATGTGCCCCCTCCTACAGATCTGGAGGACCGCCACTCCGGGTTGCCCTGCATGTCCCCCTCTGAGATCGAACTCAGAACATCCCCGGTGGCCACCGCTGCCACTGACTCTGTGAAGCACATCTTCAGCTTCAAGGACCAGGGCTCTCACTCCAACACCAGCTCTCAGCCAGGCTCTCCTACCAGGAAGCCCAGTCCTTCCCGAGGGGGGGTGGCCAAACTGCTGCACTTGCAAAGGCTGCACTCTGAGCCCTGGCTGAAGATCCCGCCCTCGCTGTTACTGCAGCAGAACAAAGCCACCTCCCTGAACGAAGACCTGCCGGATATCACCCCTGAGGAAGAGCTGTCCCTCAAGATCAACGGTCTGCCGTTCCCCAAGGCCTGCATCACCCGCCACCAGAGCATCGACGTGAAAGATGCTGGAGGCCTGAGCAAGTCCTTTGAGCAGGCGCCAGGCTGTGGTGGGGGCATGTCCCGGAAGATGTCCTACGACGAGATATCCTCGGCCCACTCTGCCTCGCACCCAGACATCAGTCGCAACTGCAGTGCCATTCCTGTGGACAAGGACCCCGACTCCATCCAGAACCTGGCTGTGTCCAGCCTGAGAAACATTGTGCAGAGGAGGAACATCGGAATGGACCACTACAGCTCAGACTCCCAGCTGCCCCTGTACACCAGCCACACAGAGGACAGCAAAGGCCTCTTGGAGAAGAAAAAGCTCATCTCAATGCACTCCTCCACACTGTCTGGATCGAGGGAGTCTCTGGAGAGCGTATCTGTGGCTCACGTGGCACGGAGGAACACAGGGATGCTGGAGCGCAGAGGATCGGGAGCCTTGCTCTTGGATCACATTGCCCACACCCGTCCAGGATACCTCCCCCCTCTAAACCCTCACCATCCCATCCCAGACATTGGGGCCAACAACAATAATAGCAACAAGCCCAGCGGCGCCATCTCTGGAGGCCCCAAACCCCTCATCCCCTCAGCCCCCACCTTCCCCAAGGATCTCAAAGCAAAGAAGATGCTGCTGCGGCGACACTCCATGCAGACCGAGCAGATCAAGCAGCTGGTCAACTTTGAGCAGATTTTTGGACATTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU95253 lncRNA upstream 210105 5243727 ~ 5248181 (+) False AMCG00009897
TU95233 lncRNA upstream 229500 5158388 ~ 5228786 (+) True G76266
TU95199 lncRNA upstream 537440 4911270 ~ 4920846 (+) False AMCG00009898
TU95119 lncRNA upstream 1204732 4253237 ~ 4253554 (+) True G76186
TU95097 lncRNA upstream 1563467 3892584 ~ 3894819 (+) True G76168
TU95334 lncRNA downstream 2639 5462523 ~ 5462811 (+) True G76346
TU95410 lncRNA downstream 284373 5744257 ~ 5751212 (+) True G76408
TU95417 lncRNA downstream 307993 5767877 ~ 5769052 (+) False AMCG00009915
TU95419 lncRNA downstream 310371 5770255 ~ 5771092 (+) True G76417
TU95420 lncRNA downstream 311790 5771674 ~ 5771949 (+) True G76418
AMCG00009906 mRNA upstream 9967 5438467 ~ 5448319 (+) True AMCG00009906
AMCG00009897 mRNA upstream 210105 5232632 ~ 5248181 (+) True AMCG00009897
AMCG00009904 mRNA upstream 313350 5142003 ~ 5144936 (+) True AMCG00009904
AMCG00009896 mRNA upstream 444956 5011378 ~ 5013330 (+) True AMCG00009896
AMCG00009898 mRNA upstream 537402 4910970 ~ 4920884 (+) True AMCG00009898
AMCG00009909 mRNA downstream 49200 5509084 ~ 5525562 (+) True AMCG00009909
AMCG00009911 mRNA downstream 103091 5562975 ~ 5594007 (+) True AMCG00009911
AMCG00009914 mRNA downstream 135554 5595438 ~ 5602983 (+) True AMCG00009914
AMCG00009916 mRNA downstream 257814 5717698 ~ 5744142 (+) True AMCG00009916
AMCG00009915 mRNA downstream 306453 5766337 ~ 5768059 (+) True AMCG00009915
TU94664 other upstream 4094452 1360536 ~ 1363834 (+) True AMCG00009851
TU94663 other upstream 4123236 1333967 ~ 1335050 (+) True G75807
TU94657 other upstream 4130722 1322618 ~ 1327564 (+) False AMCG00009844
TU94585 other upstream 4420844 1037206 ~ 1037442 (+) True G75745
TU94510 other upstream 4586551 867680 ~ 871735 (+) False AMCG00009821
TU96625 other downstream 5689742 11149626 ~ 11155469 (+) True G77423
TU96770 other downstream 6240822 11700706 ~ 11701081 (+) True G77541
TU97434 other downstream 10181077 15640961 ~ 15642841 (+) False AMCG00010119
TU97557 other downstream 10597647 16057531 ~ 16060087 (+) True G78198
TU97783 other downstream 11763998 17223882 ~ 17225340 (+) False AMCG00010164

Expression Profile